SMTL ID : 8ay7.1

X-RAY CRYSTAL STRUCTURE OF THE CsPYL1(V112L, T135L,F137I, T153I, V168A)-iSB7-HAB1 TERNARY COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

hetero-1-1-mer

Ligands

1 x S5N: N-((1,4-dimethyl-2-oxo-1,2-dihydroquinolin-6-yl)methyl)benzenesulfonamide(Non-covalent)

S5N.1: 18 residues within 4Å: Chain A: K.88, H.89, F.90, I.91, R.108, V.110, L.112, L.116, A.118, S.121, E.123, I.139, H.144, L.146, Y.149, F.188, V.192, N.196 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.112, A:L.112, A:I.139, A:H.144, A:Y.149, A:V.192 Hydrogen bonds: A:K.88, A:R.108, A:E.123, A:N.196 Water bridges: A:R.145

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Chain A: D.131 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.131, A:D.131 GOL.12: 3 residues within 4Å: Chain A: K.194 Chain B: Y.226, Y.230 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.230, B:Y.230 GOL.13: 6 residues within 4Å: Chain B: R.170, W.257, D.258, V.259, M.260, N.261 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.170 GOL.14: 2 residues within 4Å: Chain B: F.28, V.30 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.30

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 2 residues within 4Å: Chain B: D.254, D.258 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.254, H2O.3, H2O.3, H2O.3, H2O.3 MN.4: 3 residues within 4Å: Chain B: D.120, E.124, G.223 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.120, B:E.124, B:G.223, H2O.2, H2O.2 MN.5: 3 residues within 4Å: Chain B: D.65, G.66 Ligands: MN.6 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.65, B:G.66, H2O.2, H2O.2, H2O.2 MN.6: 4 residues within 4Å: Chain B: D.65, D.254, D.314 Ligands: MN.5 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.65, B:D.314, H2O.2, H2O.2, H2O.3

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 1 residues within 4Å: Chain B: R.271 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain B: R.21, S.22 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain B: R.272, M.275, W.276, A.298 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain B: G.69, H.70, K.71, V.147 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain B: V.204, Q.206 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lozano-Juste, J. et al., Structure-guided engineering of a receptor-agonist pair for inducible activation of the ABA adaptive response to drought. Sci Adv (2023)

Release Date

2023-03-22

Peptides

Abscisic acid receptor PYL1: A
Protein phosphatase 2C 16: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Abscisic acid receptor PYL1

Protein phosphatase 2C 16

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