SMTL ID : 8ayz.1

Poliovirus type 2 (strain MEF-1) virus-like particle in complex with capsid binder compound 17

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 13 residues within 4Å: Chain A: I.110, Y.112, F.134, Y.159, I.194, V.196, V.199, Y.205, S.206, D.236, F.237, L.240 Chain C: A.24 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.110, A:I.110, A:Y.112, A:F.134, A:Y.159, A:Y.159, A:Y.159, A:I.194, A:V.196, A:V.199, A:Y.205, A:Y.205, A:F.237, A:F.237, C:A.24 Hydrogen bonds: A:Y.112, A:S.206, A:S.206

1 x FHK: 4-[[4-[1,3-bis(oxidanylidene)isoindol-2-yl]phenyl]sulfonylamino]benzoic acid(Non-covalent)

FHK.2: 10 residues within 4Å: Chain A: C.86, V.87, A.88, I.89, W.108, D.114, R.258 Chain C: Q.233, E.234, A.235 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:A.88, A:I.89 Hydrogen bonds: A:I.89, C:Q.233 Salt bridges: A:R.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bahar, M.W. et al., A conserved glutathione binding site in poliovirus is a target for antivirals and vaccine stabilisation. Commun Biol (2022)

Release Date

2022-12-07

Peptides

Capsid protein, VP1: A
Capsid protein, VP0: B
Capsid protein, VP3: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Capsid protein, VP1

Capsid protein, VP0

Capsid protein, VP3

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