SMTL ID : 8b4j.1

Rfa1-N-terminal domain in complex with phosphorylated Ddc2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

hetero-1-1-mer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: T.120, N.124, Y.125, E.128, H.129 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.128

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: Y.125, H.129 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.129 ZN.3: 3 residues within 4Å: Chain B: S.8, D.9 Ligands: ZN.4 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.9, B:D.9, H2O.3 ZN.4: 3 residues within 4Å: Chain B: S.8, D.10 Ligands: ZN.3 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:S.8, B:D.10, B:D.10, H2O.3, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yates, L.A. et al., A DNA damage-induced phosphorylation circuit enhances Mec1 ATR Ddc2 ATRIP recruitment to Replication Protein A. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-09-27

Peptides

Replication factor A protein 1: A
DNA damage checkpoint protein LCD1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
O

B
P

Replication factor A protein 1

DNA damage checkpoint protein LCD1

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