SMTL ID : 8b5k.1 (1 other biounit)

Structure of haloalkane dehalogenase DmmarA from Mycobacterium marinum at pH 6.5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: M.1, I.14, D.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.15 GOL.2: 3 residues within 4Å: Chain A: P.40, H.41, R.274 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.274 GOL.4: 5 residues within 4Å: Chain A: L.7, D.8, D.71, R.74, Y.75 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.71, A:R.74, A:Y.75 GOL.5: 6 residues within 4Å: Chain B: L.7, T.64, S.66, D.71, R.74, Y.75 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.64, B:S.66, B:D.71, B:R.74, B:Y.75 GOL.6: 6 residues within 4Å: Chain B: D.95, W.96, L.121, R.125, I.196, I.233 1 PLIP interactions: 1 interactions with chain B Water bridges: B:W.96

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 7 residues within 4Å: Chain A: M.118, D.119, I.226, V.227, A.228, G.231, L.234 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.119, A:A.228, A:A.228 FMT.7: 3 residues within 4Å: Chain B: R.68, A.203, D.204 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.203, B:D.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Snajdarova, K. et al., Atypical homodimerization revealed by the structure of the (S)-enantioselective haloalkane dehalogenase DmmarA from Mycobacterium marinum. Acta Crystallogr D Struct Biol (2023)

Release Date

2023-08-30

Peptides

Haloalkane dehalogenase DhaA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Haloalkane dehalogenase DhaA

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