SMTL ID : 8b5o.1 (3 other biounits)

Structure of haloalkane dehalogenase DmmarA from Mycobacterium marinum at pH 5.5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: M.1, K.2, I.14, D.15, V.16 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.1, A:D.15 GOL.4: 5 residues within 4Å: Chain A: T.64, S.66, D.71, R.74, Y.75 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.64, A:T.64, A:S.66, A:R.74, A:R.74

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 5 residues within 4Å: Chain A: D.264, S.265, P.266, D.267, A.268 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.267, A:A.268 FMT.3: 1 residues within 4Å: Chain A: E.199 No protein-ligand interaction detected (PLIP) FMT.5: 5 residues within 4Å: Chain A: D.95, W.96, R.125, I.196, I.233 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.125 FMT.6: 4 residues within 4Å: Chain A: R.3, S.9, A.10, G.60 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.3 Water bridges: A:T.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Snajdarova, K. et al., Atypical homodimerization revealed by the structure of the (S)-enantioselective haloalkane dehalogenase DmmarA from Mycobacterium marinum. Acta Crystallogr D Struct Biol (2023)

Release Date

2023-08-30

Peptides

Haloalkane dehalogenase DhaA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Haloalkane dehalogenase DhaA

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