SMTL ID : 8b8u.2 (1 other biounit)

Crystal structure of JAK2 JH2-V617F in complex with HTS-A3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: L.248, N.251, P.261, A.265, I.266, D.269 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.251, A:D.269, A:D.269 Water bridges: A:N.251 GOL.2: 7 residues within 4Å: Chain A: R.234, Q.236, M.253, D.254, Y.255, E.256, H.259 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.236, A:D.254, A:D.254, A:Y.255, A:E.256 Water bridges: A:Q.236, A:N.250, A:M.253, A:D.254 GOL.4: 7 residues within 4Å: Chain A: N.138, C.140, K.142, R.180, W.183, E.210, K.217 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.138, A:N.138, A:K.142 Water bridges: A:R.180, A:R.180

1 x T7I: 3,5-diphenyl-2-(trifluoromethyl)-1~{H}-pyrazolo[1,5-a]pyrimidin-7-one(Non-covalent)

T7I.3: 17 residues within 4Å: Chain A: L.16, G.17, Q.18, I.24, L.44, K.46, E.92, F.93, V.94, K.95, F.96, G.97, S.98, K.142, N.143, L.145, S.163 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.16, A:I.24, A:F.93, A:F.93, A:K.142, A:L.145 Hydrogen bonds: A:V.94 Water bridges: A:S.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Virtanen, A.T. et al., Identification of Novel Small Molecule Ligands for JAK2 Pseudokinase Domain. Pharmaceuticals (2023)

Release Date

2023-02-01

Peptides

Tyrosine-protein kinase JAK2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Tyrosine-protein kinase JAK2

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