SMTL ID : 8ba2.1

Crystal structure of JAK2 JH2-V617F in complex with Z902-A1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: L.248, N.251, P.261, A.265, I.266, D.269 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.251, A:D.269 GOL.2: 8 residues within 4Å: Chain A: S.70, H.71, K.72, L.74, V.75, L.76, K.161 Ligands: GOL.8 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.70, A:H.71, A:H.71, A:V.75, A:K.161 GOL.3: 1 residues within 4Å: Chain A: H.259 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.259 GOL.6: 5 residues within 4Å: Chain A: E.14, L.16, K.26, F.93 Ligands: Q9X.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.14, A:K.26 Water bridges: A:E.14 GOL.8: 6 residues within 4Å: Chain A: L.76, Y.78, E.92, I.147, K.161 Ligands: GOL.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.78, A:K.161

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 3 residues within 4Å: Chain A: H.127, R.264, I.267 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.267 Water bridges: A:H.127, A:R.264, A:R.264 Salt bridges: A:H.127, A:R.264 ACT.5: 5 residues within 4Å: Chain A: F.96, Y.102, K.105, N.106, E.149 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.102 Hydrogen bonds: A:Y.102, A:N.106

1 x Q9X: 6-[[(5-bromanylthiophen-2-yl)methyl-methyl-amino]methyl]-~{N}4-(4-methylphenyl)-1,3,5-triazine-2,4-diamine(Non-covalent)

Q9X.7: 19 residues within 4Å: Chain A: L.16, Q.18, I.24, L.44, K.46, V.75, Q.91, E.92, F.93, V.94, K.95, F.96, G.97, S.98, K.142, N.143, L.145, S.163 Ligands: GOL.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.91, A:V.94, A:V.94 Water bridges: A:K.46, A:S.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Virtanen, A.T. et al., Identification of Novel Small Molecule Ligands for JAK2 Pseudokinase Domain. Pharmaceuticals (2023)

Release Date

2023-02-01

Peptides

Tyrosine-protein kinase JAK2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase JAK2

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