SMTL ID : 8b9h.1

Crystal structure of JAK2 JH2 in complex with Z902-A3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x Q7F: 6-[[methyl-[(3-methylthiophen-2-yl)methyl]amino]methyl]-~{N}4-phenyl-1,3,5-triazine-2,4-diamine(Non-covalent)

Q7F.1: 19 residues within 4Å: Chain A: L.16, G.17, Q.18, I.24, L.44, K.46, V.75, Q.91, E.92, F.93, V.94, K.95, F.96, G.97, S.98, K.142, N.143, L.145, S.163 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.16, A:I.24, A:F.93, A:F.93 Hydrogen bonds: A:E.92, A:V.94, A:V.94, A:G.97 Water bridges: A:K.46, A:S.98

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: N.138, C.140, K.142, R.180, W.183, E.210, K.217 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.138, A:N.138, A:R.180 GOL.3: 6 residues within 4Å: Chain A: F.12, F.25, V.47, K.50, E.86, I.88 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.86 GOL.4: 7 residues within 4Å: Chain A: S.70, H.71, K.72, L.74, V.75, L.76, K.161 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.71, A:H.71, A:L.74, A:K.161 GOL.5: 5 residues within 4Å: Chain A: K.72, I.147, R.148, F.159, K.161 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.148 Water bridges: A:K.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Virtanen, A.T. et al., Identification of Novel Small Molecule Ligands for JAK2 Pseudokinase Domain. Pharmaceuticals (2023)

Release Date

2023-02-01

Peptides

Tyrosine-protein kinase JAK2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase JAK2

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