SMTL ID : 8bc8.1

Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 18

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

hetero-1-1-mer

Ligands

4 x QB6: 3-azanyl-4-oxidanyl-benzenesulfonamide(Non-covalent)

QB6.1: 9 residues within 4Å: Chain A: E.594, N.712, R.713, N.1142, I.1143, S.1144, Q.1318, G.1319, S.1320 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:E.594, A:N.712, A:N.1142 Hydrogen bonds: A:R.713, A:N.1142, A:Q.1318, A:S.1320 Water bridges: A:R.713 QB6.2: 6 residues within 4Å: Chain A: W.204, T.217, Q.218, I.223, A.246, N.249 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.204, A:T.217, A:T.217, A:N.249 QB6.3: 10 residues within 4Å: Chain A: P.962, T.963, G.964, S.965, G.966, K.967, T.968, L.996, D.1065, E.1066 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.964, A:S.965, A:G.966, A:K.967, A:K.967, A:T.968, A:D.1065 QB6.19: 6 residues within 4Å: Chain B: H.32, Y.34, T.162, P.163, G.164, S.165 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.34, B:T.162, B:S.165, B:S.165

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 8 residues within 4Å: Chain A: R.156, V.159, E.179, L.180, V.198, C.199, T.200, K.203 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: F.866, I.1292, F.1324, P.1334 Ligands: EDO.11 Ligand excluded by PLIP EDO.6: 5 residues within 4Å: Chain A: R.209, D.510, M.511, Y.603, I.604 Ligand excluded by PLIP EDO.7: 7 residues within 4Å: Chain A: T.808, F.866, V.867, P.868, D.1323, K.1327 Ligands: EDO.17 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain A: M.155, R.156, S.157, T.425, W.428 Ligands: EDO.9 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain A: P.154, M.155, R.156, R.235 Ligands: EDO.8 Ligand excluded by PLIP EDO.10: 6 residues within 4Å: Chain A: T.805, R.806, P.903, E.904, K.905, Y.906 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain A: Y.1290, P.1291, I.1292, F.1324 Ligands: EDO.5, EDO.17 Ligand excluded by PLIP EDO.12: 6 residues within 4Å: Chain A: Y.1087, T.1355, D.1361, D.1364, Y.1365, W.1368 Ligand excluded by PLIP EDO.13: 5 residues within 4Å: Chain A: Y.602, R.704, F.707, E.708, W.833 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain A: S.506, K.507, P.509, D.510, N.606 Ligand excluded by PLIP EDO.15: 6 residues within 4Å: Chain A: T.116, G.117, A.118, G.119, K.120, T.121 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain A: E.848, L.862, I.863, T.864 Ligand excluded by PLIP EDO.17: 5 residues within 4Å: Chain A: F.866, K.1321, F.1324 Ligands: EDO.7, EDO.11 Ligand excluded by PLIP EDO.18: 3 residues within 4Å: Chain B: Q.105, Q.108, K.236 Ligand excluded by PLIP EDO.20: 3 residues within 4Å: Chain B: K.56, C.59, E.246 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vester, K. et al., Conformation-dependent ligand hot spots in the spliceosomal RNA helicase BRR2. Acta Crystallogr D Struct Biol (2023)

Release Date

2023-03-08

Peptides

U5 small nuclear ribonucleoprotein 200 kDa helicase: A
Pre-mRNA-processing-splicing factor 8: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
J

U5 small nuclear ribonucleoprotein 200 kDa helicase

Pre-mRNA-processing-splicing factor 8

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