SMTL ID : 8bc9.1

Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 24

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x A09: N-hydroxybenzenesulfonamide(Non-covalent)

A09.1: 8 residues within 4Å: Chain A: F.866, G.1071, I.1292, Y.1293, F.1324, F.1328, L.1333, P.1334 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.866, A:F.1324, A:L.1333 Hydrogen bonds: A:I.1292 pi-Stacking: A:F.1328

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: P.962, T.963, G.964, S.965, G.966, K.967, T.968 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.964, A:S.965, A:G.966, A:K.967, A:K.967, A:K.967, A:T.968 EDO.3: 3 residues within 4Å: Chain A: E.108, D.279, K.282 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.108 Water bridges: A:E.108 EDO.4: 3 residues within 4Å: Chain A: P.154, M.155, R.156 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.156 Water bridges: A:S.157, A:R.235 EDO.5: 6 residues within 4Å: Chain A: Q.185, K.210, R.597, H.601, Y.602, E.708 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.185, A:R.597, A:Y.602, A:E.708 EDO.6: 5 residues within 4Å: Chain A: T.805, R.806, E.904, K.905, Y.906 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.806, A:Y.906 EDO.7: 6 residues within 4Å: Chain A: R.209, D.510, A.599, Y.603, I.604, T.605 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.209, A:R.209, A:I.604 EDO.8: 4 residues within 4Å: Chain A: F.936, Q.943, G.966, I.969 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.940, A:Q.943 EDO.9: 3 residues within 4Å: Chain A: W.204, T.217, I.223 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.217, A:T.217 EDO.10: 2 residues within 4Å: Chain A: Y.1434, R.1532 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.1532 EDO.11: 3 residues within 4Å: Chain A: E.848, T.864, D.1289 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.846 Water bridges: A:T.864, A:D.1289 EDO.12: 4 residues within 4Å: Chain B: G.151, E.152, T.174, P.175 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.152, B:T.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vester, K. et al., Conformation-dependent ligand hot spots in the spliceosomal RNA helicase BRR2. Acta Crystallogr D Struct Biol (2023)

Release Date

2023-03-08

Peptides

U5 small nuclear ribonucleoprotein 200 kDa helicase: A
Pre-mRNA-processing-splicing factor 8: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
J

U5 small nuclear ribonucleoprotein 200 kDa helicase

Pre-mRNA-processing-splicing factor 8

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