SMTL ID : 8bca.1

Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 26

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

2 x Q96: 3-azanyl-~{N}-methyl-4-(methylamino)benzenesulfonamide(Non-covalent)

Q96.1: 11 residues within 4Å: Chain A: E.594, N.712, R.713, H.847, F.1141, N.1142, I.1143, S.1144, Q.1318, G.1319, S.1320 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:N.712, A:N.1142 Hydrogen bonds: A:E.594, A:E.594, A:N.712, A:Q.1318, A:S.1320 Water bridges: A:R.713 Q96.2: 9 residues within 4Å: Chain A: T.274, F.275, R.277, G.532, Y.533, A.534, Y.537, I.538, L.541 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.274, A:Y.537, A:I.538 Hydrogen bonds: A:R.277, A:Y.533 Water bridges: A:T.274

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: R.209, D.510, M.511, A.599, Y.603, I.604, T.605 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.209, A:R.209, A:I.604 Water bridges: A:D.510 EDO.5: 4 residues within 4Å: Chain A: H.846, E.848, T.864, D.1289 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.848 EDO.6: 4 residues within 4Å: Chain A: D.838, V.839, F.870, Y.877 No protein-ligand interaction detected (PLIP) EDO.7: 4 residues within 4Å: Chain A: Q.40, L.41, P.42, N.495 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.40, A:L.41 EDO.8: 5 residues within 4Å: Chain A: Y.602, R.704, F.707, E.708, W.833 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.704, A:E.708 EDO.9: 2 residues within 4Å: Chain A: Y.603, R.701 No protein-ligand interaction detected (PLIP) EDO.10: 7 residues within 4Å: Chain A: E.984, G.985, R.986, G.1031, K.1032, G.1033, N.1034 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.986, A:G.1031 EDO.11: 6 residues within 4Å: Chain A: M.993, G.1072, E.1073, P.1291, Y.1293, D.1294 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.1073 EDO.12: 7 residues within 4Å: Chain A: K.731, Q.742, F.743, R.744, V.825, R.885, W.886 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.731, A:R.744, A:V.825, A:R.885

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: W.204, I.223, A.246 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vester, K. et al., Conformation-dependent ligand hot spots in the spliceosomal RNA helicase BRR2. Acta Crystallogr D Struct Biol (2023)

Release Date

2023-03-08

Peptides

U5 small nuclear ribonucleoprotein 200 kDa helicase: A
Pre-mRNA-processing-splicing factor 8: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
J

U5 small nuclear ribonucleoprotein 200 kDa helicase

Pre-mRNA-processing-splicing factor 8

Related Entries With Identical Sequence