SMTL ID : 8bcb.1

Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 34

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

hetero-1-1-mer

Ligands

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: I.804, I.1292, L.1333 Ligand excluded by PLIP EDO.2: 6 residues within 4Å: Chain A: R.209, D.510, M.511, A.599, Y.603, I.604 Ligand excluded by PLIP EDO.3: 5 residues within 4Å: Chain A: T.808, F.866, P.868, F.1324, K.1327 Ligand excluded by PLIP EDO.4: 6 residues within 4Å: Chain A: T.805, R.806, P.903, E.904, K.905, Y.906 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: Y.602, R.704, F.707, E.708, W.833 Ligand excluded by PLIP EDO.6: 4 residues within 4Å: Chain A: M.574, K.577, N.578, D.607 Ligand excluded by PLIP EDO.7: 2 residues within 4Å: Chain A: E.202, Y.603 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain A: P.875, S.896, R.898 Chain B: Y.111, F.213, L.241 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: F.936, N.940, Q.943 Ligand excluded by PLIP EDO.10: 2 residues within 4Å: Chain A: R.347, E.384 Ligand excluded by PLIP EDO.11: 5 residues within 4Å: Chain A: S.1542, L.1687, I.1688, S.1689, I.1690 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain A: M.1428, I.1429, D.1539, R.1692 Ligand excluded by PLIP EDO.13: 4 residues within 4Å: Chain A: F.866, D.1289, S.1320, F.1324 Ligand excluded by PLIP EDO.14: 6 residues within 4Å: Chain A: P.1470, R.1472, H.1473, K.1501, E.1518, D.1522 Ligand excluded by PLIP EDO.15: 3 residues within 4Å: Chain A: K.98, Y.286, F.287 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain A: R.654 Chain B: W.16, R.17, H.256 Ligand excluded by PLIP

2 x SAN: SULFANILAMIDE(Non-covalent)

SAN.16: 9 residues within 4Å: Chain A: N.712, R.713, F.1141, N.1142, I.1143, S.1144, Q.1318, G.1319, S.1320 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:N.712, A:N.1142 Hydrogen bonds: A:N.1142, A:Q.1318, A:G.1319, A:S.1320 Water bridges: A:I.709, A:I.709, A:R.713, A:R.713 SAN.17: 7 residues within 4Å: Chain A: W.204, T.217, V.220, I.223, R.245, A.246, N.249 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.245 Water bridges: A:N.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vester, K. et al., Conformation-dependent ligand hot spots in the spliceosomal RNA helicase BRR2. Acta Crystallogr D Struct Biol (2023)

Release Date

2023-03-08

Peptides

U5 small nuclear ribonucleoprotein 200 kDa helicase: A
Pre-mRNA-processing-splicing factor 8: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
J

U5 small nuclear ribonucleoprotein 200 kDa helicase

Pre-mRNA-processing-splicing factor 8

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