SMTL ID : 8bcc.1

Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 39

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-1-1-mer

Ligands

3 x QAU: 3-oxidanylbenzenesulfonamide(Non-covalent)

QAU.1: 8 residues within 4Å: Chain A: W.204, T.217, V.220, I.223, R.245, A.246, N.249, V.257 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.245 Hydrogen bonds: A:T.217, A:T.217 QAU.2: 9 residues within 4Å: Chain A: E.594, N.712, F.1141, N.1142, I.1143, S.1144, Q.1318, G.1319, S.1320 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:N.712, A:N.1142 Hydrogen bonds: A:E.594, A:F.1141, A:Q.1318, A:G.1319, A:S.1320 Water bridges: A:N.1142 QAU.3: 6 residues within 4Å: Chain A: D.838, V.839, D.840, F.870 Chain B: N.52, L.211 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.838, A:V.839 Hydrophobic interactions: B:L.211

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: I.804, I.1292, L.1333 No protein-ligand interaction detected (PLIP) EDO.5: 6 residues within 4Å: Chain A: T.808, F.866, V.867, P.868, F.1324, K.1327 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.866, A:K.1327, A:K.1327 EDO.6: 5 residues within 4Å: Chain A: R.209, D.510, A.599, Y.603, I.604 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.209, A:R.209, A:I.604 Water bridges: A:D.205, A:N.513 EDO.7: 6 residues within 4Å: Chain A: R.156, V.159, E.179, C.199, T.200, K.203 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.179, A:T.200 EDO.8: 2 residues within 4Å: Chain A: M.155, R.156 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.156 EDO.9: 6 residues within 4Å: Chain A: T.805, R.806, P.903, E.904, K.905, Y.906 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.806, A:E.904 EDO.10: 6 residues within 4Å: Chain A: Y.1087, T.1355, D.1361, D.1364, Y.1365, W.1368 No protein-ligand interaction detected (PLIP) EDO.11: 2 residues within 4Å: Chain A: F.285, Y.286 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.286 EDO.12: 3 residues within 4Å: Chain A: F.936, N.940, Q.943 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.940, A:Q.943 EDO.13: 6 residues within 4Å: Chain A: R.654 Chain B: W.16, R.17, H.256, N.259, F.260 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vester, K. et al., Conformation-dependent ligand hot spots in the spliceosomal RNA helicase BRR2. Acta Crystallogr D Struct Biol (2023)

Release Date

2023-03-08

Peptides

U5 small nuclear ribonucleoprotein 200 kDa helicase: A
Pre-mRNA-processing-splicing factor 8: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
J

U5 small nuclear ribonucleoprotein 200 kDa helicase

Pre-mRNA-processing-splicing factor 8

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