SMTL ID : 8bcg.1

Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 86

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

hetero-1-1-mer

Ligands

1 x Q9I: 4-chloranyl-~{N}-methoxy-~{N}-methyl-benzenesulfonamide(Non-covalent)

Q9I.1: 13 residues within 4Å: Chain A: W.204, T.208, T.217, V.220, I.223, L.242, R.245, A.246, N.249, I.250, T.253, E.255, V.257 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.246, A:N.249, A:V.257 Halogen bonds: A:E.255

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: E.202, Y.603 No protein-ligand interaction detected (PLIP) EDO.3: 3 residues within 4Å: Chain A: M.155, R.156, R.235 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.156 Water bridges: A:R.235 EDO.4: 4 residues within 4Å: Chain A: T.805, R.806, K.905, Y.906 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.806 EDO.5: 4 residues within 4Å: Chain A: I.1292, F.1328, L.1333, P.1334 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.1334 EDO.6: 4 residues within 4Å: Chain A: R.209, D.510, Y.603, I.604 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.209, A:R.209, A:D.510, A:Y.603 Water bridges: A:Y.603 EDO.7: 2 residues within 4Å: Chain A: N.940, Q.943 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.940, A:Q.943 EDO.8: 3 residues within 4Å: Chain A: H.790, D.818, Q.820 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.818, A:Q.820 EDO.9: 1 residues within 4Å: Chain A: Q.981 No protein-ligand interaction detected (PLIP) EDO.10: 4 residues within 4Å: Chain A: H.846, E.848, T.864, K.1321 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.848, A:K.1321, A:K.1321 Water bridges: A:T.864

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vester, K. et al., Conformation-dependent ligand hot spots in the spliceosomal RNA helicase BRR2. Acta Crystallogr D Struct Biol (2023)

Release Date

2023-03-08

Peptides

U5 small nuclear ribonucleoprotein 200 kDa helicase: A
Pre-mRNA-processing-splicing factor 8: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
J

U5 small nuclear ribonucleoprotein 200 kDa helicase

Pre-mRNA-processing-splicing factor 8

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