SMTL ID : 8bfn.1

E. coli Wadjet JetABC dimer of dimers

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-2-mer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: G.24, G.25, T.45, G.46, S.47, G.48, K.49, T.50, T.51, R.78, S.82, Y.83, V.87, S.88, G.89, P.90, G.91, R.1070 Chain B: S.985 21 PLIP interactions: 20 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.25, A:T.45, A:T.45, A:G.46, A:K.49, A:T.50, A:T.50, A:T.51, A:T.51, A:R.78, A:S.82, A:S.82, A:G.89, A:G.91, A:R.1070, B:S.985 Salt bridges: A:K.49, A:K.49, A:R.78 pi-Cation interactions: A:R.78, A:R.78 ADP.2: 20 residues within 4Å: Chain A: G.983, S.985, G.986, G.987, E.988 Chain B: P.44, T.45, G.46, S.47, G.48, K.49, T.50, T.51, R.78, S.82, V.87, S.88, G.89, P.90, R.1070 18 PLIP interactions: 14 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:G.46, B:S.47, B:T.50, B:T.50, B:T.51, B:T.51, B:R.78, B:S.82, B:S.82, B:G.89, B:R.1070, A:S.985, A:G.986, A:G.987, A:E.988 Salt bridges: B:K.49, B:K.49 pi-Cation interactions: B:R.78 ADP.3: 19 residues within 4Å: Chain F: G.24, G.25, T.45, G.46, S.47, G.48, K.49, T.50, T.51, R.78, S.82, Y.83, V.87, S.88, G.89, P.90, G.91, R.1070 Chain G: S.985 20 PLIP interactions: 19 interactions with chain F, 1 interactions with chain G Hydrogen bonds: F:G.25, F:T.45, F:T.45, F:G.46, F:K.49, F:T.50, F:T.50, F:T.51, F:T.51, F:S.82, F:S.82, F:G.89, F:G.91, F:R.1070, G:S.985 Salt bridges: F:K.49, F:K.49, F:R.78 pi-Cation interactions: F:R.78, F:R.78 ADP.4: 19 residues within 4Å: Chain F: G.983, S.985, G.986, G.987, E.988 Chain G: T.45, G.46, S.47, G.48, K.49, T.50, T.51, R.78, S.82, V.87, S.88, G.89, P.90, R.1070 17 PLIP interactions: 13 interactions with chain G, 4 interactions with chain F Hydrogen bonds: G:G.46, G:S.47, G:T.50, G:T.50, G:T.51, G:R.78, G:S.82, G:S.82, G:G.89, G:R.1070, F:S.985, F:G.986, F:G.987, F:E.988 Salt bridges: G:K.49, G:K.49 pi-Cation interactions: G:R.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, H.W. et al., DNA-measuring Wadjet SMC ATPases restrict smaller circular plasmids by DNA cleavage. Mol.Cell (2022)

Release Date

2022-12-14

Peptides

JetC: ABFG
JetB: CDHI
JetA: EJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

F
F

G
G

C
C

D
D

H
H

I
I

E
E

J
J

JetC

JetB

JetA

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