SMTL ID : 8q72.1

E. coli plasmid-borne JetABCD(E248A) core in a cleavage-competent state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-2-2-mer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: T.45, G.46, S.47, G.48, K.49, T.50, T.51, D.77, R.78, Y.83, S.88, G.89, P.90, G.91, R.1070 Chain B: Q.982, G.983, G.984, S.985 21 PLIP interactions: 2 interactions with chain B, 19 interactions with chain A Hydrogen bonds: B:G.984, B:S.985, A:G.46, A:S.47, A:G.48, A:G.48, A:K.49, A:T.50, A:T.51, A:T.51, A:D.77, A:D.77, A:R.78, A:R.78, A:R.78, A:G.91, A:G.91, A:R.1070, A:R.1070 Salt bridges: A:K.49 pi-Cation interactions: A:R.78 ADP.2: 23 residues within 4Å: Chain A: G.983, G.984, S.985, G.986, G.987, E.988 Chain B: G.24, G.25, T.45, G.46, S.47, G.48, K.49, T.50, T.51, R.78, S.82, Y.83, V.87, S.88, G.89, P.90, R.1070 20 PLIP interactions: 15 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:G.46, B:S.47, B:G.48, B:K.49, B:T.50, B:T.51, B:T.51, B:R.78, B:R.78, B:S.82, B:G.89, B:R.1070, A:G.983, A:S.985, A:S.985, A:S.985, A:G.986 Salt bridges: B:K.49 pi-Cation interactions: B:R.78, B:R.78 ADP.3: 21 residues within 4Å: Chain F: T.45, G.46, S.47, G.48, K.49, T.50, T.51, D.77, R.78, S.82, Y.83, V.87, S.88, G.89, P.90, G.91, R.1070 Chain G: Q.982, G.983, G.984, S.985 17 PLIP interactions: 16 interactions with chain F, 1 interactions with chain G Hydrogen bonds: F:G.46, F:S.47, F:G.48, F:G.48, F:K.49, F:T.50, F:T.51, F:T.51, F:D.77, F:D.77, F:G.91, F:R.1070, F:R.1070, G:G.984 Salt bridges: F:K.49 pi-Cation interactions: F:R.78, F:R.78 ADP.4: 20 residues within 4Å: Chain F: G.983, S.985, G.986, E.988 Chain G: G.24, G.25, T.45, G.46, S.47, G.48, K.49, T.50, T.51, R.78, S.82, Y.83, V.87, S.88, G.89, P.90 16 PLIP interactions: 14 interactions with chain G, 2 interactions with chain F Hydrogen bonds: G:G.46, G:G.46, G:S.47, G:G.48, G:T.50, G:T.51, G:T.51, G:R.78, G:R.78, G:S.82, G:G.89, F:S.985, F:E.988 Salt bridges: G:K.49 pi-Cation interactions: G:R.78, G:R.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roisne-Hamelin, F. et al., Structural basis for plasmid restriction by SMC JET nuclease. Mol.Cell (2024)

Release Date

2024-01-31

Peptides

JetC: ABFG
JetB: CDHI
JetA: EJ
JetD(E248A): KL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

F
F

G
G

C
C

D
D

H
H

I
I

E
E

J
J

K
M

L
N

JetC

JetB

JetA

JetD(E248A)

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