SMTL ID : 8bhh.1 (1 other biounit)

The crystal structure of a feruloyl esterase C from Fusarium oxysporum in complex with p-coumaric acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.1: 15 residues within 4Å: Chain A: S.127, V.324, I.325, W.326, N.327, K.343, E.346, V.347, N.348, P.349, F.350, N.351, E.353, W.355, E.356 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.350 Water bridges: A:F.350

1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.2: 10 residues within 4Å: Chain A: W.21, F.22, D.36, N.37, R.54, A.56, N.66, T.68, E.70, N.116 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.56 Hydrogen bonds: A:D.36, A:D.36

1 x HC4: 4'-HYDROXYCINNAMIC ACID(Non-covalent)

HC4.3: 12 residues within 4Å: Chain A: G.87, G.88, S.166, T.167, F.195, L.198, Q.199, S.202, F.314, Y.316, I.380, H.417 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.195, A:L.198, A:F.314, A:Y.316, A:Y.316, A:I.380 Hydrogen bonds: A:G.88, A:S.166, A:T.167, A:Q.199, A:S.202 Salt bridges: A:H.417 pi-Stacking: A:Y.316

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 5 residues within 4Å: Chain A: F.58, K.64, S.65, N.66, N.126 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.58 Hydrogen bonds: A:N.66, A:N.126

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: W.77, T.78, G.79, K.155 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.77, A:K.155 EDO.6: 5 residues within 4Å: Chain A: E.236, P.237, L.238, G.240, R.491 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.238, A:R.491 EDO.7: 4 residues within 4Å: Chain A: Q.253, Y.254, R.255, R.279 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.279, A:R.279 Water bridges: A:Y.254 EDO.8: 4 residues within 4Å: Chain A: N.229, V.232, Q.233, A.258 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.229, A:Q.233 Water bridges: A:Q.233, A:R.255

1 x CA: CALCIUM ION(Non-covalent)

CA.9: 5 residues within 4Å: Chain A: D.235, D.239, V.241, D.243, I.245 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.235, A:D.239, A:D.243, A:I.245, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferousi, C. et al., Crystal structure of the Fusarium oxysporum tannase-like feruloyl esterase FaeC in complex with p-coumaric acid provides insight into ligand binding. Febs Lett. (2023)

Release Date

2023-07-05

Peptides

Carboxylic ester hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carboxylic ester hydrolase

Related Entries With Identical Sequence