SMTL ID : 8bhh.2 (1 other biounit)

The crystal structure of a feruloyl esterase C from Fusarium oxysporum in complex with p-coumaric acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

2 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.1: 9 residues within 4Å: Chain A: W.21, F.22, E.24, D.36, A.56, N.66, T.68, E.70, N.116 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.24, A:R.54 Water bridges: A:D.36, A:D.36, A:D.36 Hydrophobic interactions: A:A.56 NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.2: 16 residues within 4Å: Chain A: S.127, V.324, I.325, W.326, N.327, K.343, S.345, E.346, V.347, N.348, P.349, F.350, N.351, E.353, W.355, E.356 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.350 Water bridges: A:K.343, A:E.346, A:F.350

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 5 residues within 4Å: Chain A: Y.286, Y.292, M.386, E.387, N.390 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.286, A:N.390 Water bridges: A:Y.292

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.4: 3 residues within 4Å: Chain A: E.276, R.279, K.280 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.276, A:R.279 Water bridges: A:R.279, A:R.279

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 5 residues within 4Å: Chain A: F.58, K.64, S.65, N.66, N.126 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.66, A:N.126 NAG.13: 3 residues within 4Å: Chain A: N.31, T.33, S.45 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.45 Water bridges: A:N.31, A:S.45 NAG.14: 3 residues within 4Å: Chain A: N.76, T.78, F.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.76, A:F.104

1 x HC4: 4'-HYDROXYCINNAMIC ACID(Non-covalent)

HC4.6: 12 residues within 4Å: Chain A: G.87, G.88, S.166, T.167, F.195, L.198, Q.199, S.202, F.314, Y.316, I.380, H.417 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.195, A:F.314, A:Y.316, A:Y.316, A:I.380 Hydrogen bonds: A:G.88, A:S.166, A:T.167, A:Q.199, A:S.202 Salt bridges: A:H.417 pi-Stacking: A:Y.316

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 5 residues within 4Å: Chain A: T.40, C.41, T.42, C.92, T.118 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.42 EDO.8: 4 residues within 4Å: Chain A: Y.135, K.174, S.178, F.350 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.350 Water bridges: A:N.351 EDO.9: 4 residues within 4Å: Chain A: W.77, T.78, G.79, K.155 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.155 EDO.10: 4 residues within 4Å: Chain A: T.335, G.337, N.339, D.340 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.337, A:N.339, A:D.340 EDO.12: 3 residues within 4Å: Chain A: D.49, R.431, L.434 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.49, A:R.431 EDO.15: 3 residues within 4Å: Chain A: G.207, I.208, K.280 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.280

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.11: 5 residues within 4Å: Chain A: V.474, E.475, E.477, K.496, P.498 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.16: 5 residues within 4Å: Chain A: D.235, D.239, V.241, D.243, I.245 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.235, A:D.239, A:D.239, A:V.241, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferousi, C. et al., Crystal structure of the Fusarium oxysporum tannase-like feruloyl esterase FaeC in complex with p-coumaric acid provides insight into ligand binding. Febs Lett. (2023)

Release Date

2023-07-05

Peptides

Carboxylic ester hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Carboxylic ester hydrolase

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