SMTL ID : 8bkb.1

Cryo-EM structure of mouse heavy-chain apoferritin at 2.2 A plunged 205ms after mixing with b-galactosidase

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-24-mer

Ligands

6 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain B: H.174 Chain G: H.174 Chain L: H.174 Chain S: H.174 4 PLIP interactions: 1 interactions with chain G, 1 interactions with chain L, 1 interactions with chain S, 1 interactions with chain B Metal complexes: G:H.174, L:H.174, S:H.174, B:H.174 FE.2: 4 residues within 4Å: Chain C: H.174 Chain K: H.174 Chain M: H.174 Chain R: H.174 4 PLIP interactions: 1 interactions with chain K, 1 interactions with chain R, 1 interactions with chain C, 1 interactions with chain M Metal complexes: K:H.174, R:H.174, C:H.174, M:H.174 FE.3: 4 residues within 4Å: Chain D: H.174 Chain F: H.174 Chain I: H.174 Chain J: H.174 4 PLIP interactions: 1 interactions with chain J, 1 interactions with chain D, 1 interactions with chain I, 1 interactions with chain F Metal complexes: J:H.174, D:H.174, I:H.174, F:H.174 FE.4: 4 residues within 4Å: Chain H: H.174 Chain P: H.174 Chain U: H.174 Chain X: H.174 4 PLIP interactions: 1 interactions with chain P, 1 interactions with chain X, 1 interactions with chain H, 1 interactions with chain U Metal complexes: P:H.174, X:H.174, H:H.174, U:H.174 FE.5: 4 residues within 4Å: Chain N: H.174 Chain O: H.174 Chain Q: H.174 Chain V: H.174 4 PLIP interactions: 1 interactions with chain N, 1 interactions with chain O, 1 interactions with chain Q, 1 interactions with chain V Metal complexes: N:H.174, O:H.174, Q:H.174, V:H.174 FE.6: 4 residues within 4Å: Chain A: H.174 Chain E: H.174 Chain T: H.174 Chain W: H.174 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain A Metal complexes: E:H.174, A:H.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Torino, S. et al., Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting. Nat.Methods (2023)

Release Date

2023-08-09

Peptides

Ferritin heavy chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
V

V
W

W
X

X
Y

Ferritin heavy chain

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