SMTL ID : 8bn6.1

Pseudomonas aeruginosa DNA gyrase B 24kDa ATPase subdomain complexed with EBL3021

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 3 residues within 4Å: Chain A: N.76, G.77, S.165 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:G.77, H2O.4, H2O.4, H2O.5, H2O.6 CA.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x R53: 2-[[3,4-bis(chloranyl)-5-methyl-1~{H}-pyrrol-2-yl]carbonylamino]-4-morpholin-4-yl-1,3-benzothiazole-6-carboxylic acid(Non-covalent)

R53.3: 13 residues within 4Å: Chain A: V.45, N.48, S.49, E.52, D.75, R.78, G.79, I.80, P.81, V.122, R.138, T.167, V.169 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.45, A:P.81 Hydrogen bonds: A:D.75, A:T.167 Water bridges: A:R.78, A:R.138, A:R.138, A:R.138 Salt bridges: A:R.78, A:R.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Durcik, M. et al., New Dual Inhibitors of Bacterial Topoisomerases with Broad-Spectrum Antibacterial Activity and In Vivo Efficacy against Vancomycin-Intermediate Staphylococcus aureus . J.Med.Chem. (2023)

Release Date

2023-03-29

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA gyrase subunit B

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