SMTL ID : 8bo7.1

COAGULATION FACTOR XI PROTEASE DOMAIN IN COMPLEX WITH ACTIVE SITE INHIBITOR 34

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x QW6: 4-[[(2~{S})-2-[4-(5-chloranyl-2-cyano-phenyl)-3-methoxy-6-oxidanylidene-2,5-dihydropyridin-1-yl]-3-[(2~{S})-oxan-2-yl]propanoyl]amino]benzoic acid(Non-covalent)

QW6.1: 21 residues within 4Å: Chain A: R.26, L.28, H.44, C.45, Y.134, I.141, D.182, A.183, C.184, K.185, G.186, D.187, S.188, T.206, W.208, G.209, G.211, C.212, G.219, V.220, Y.221 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.141, A:K.185, A:T.206 Hydrogen bonds: A:Y.134, A:G.186, A:D.187, A:S.188, A:S.188, A:G.209 Water bridges: A:R.26, A:R.26, A:L.28, A:H.44, A:S.188 Salt bridges: A:R.26

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 4 residues within 4Å: Chain A: Q.84, Y.92, H.169, K.170 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.84, A:K.170 Salt bridges: A:H.169, A:H.169, A:K.170, A:K.170

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 5 residues within 4Å: Chain A: T.125, D.126, K.195, H.196, N.197 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.125, A:T.125, A:H.196, A:N.197, A:N.197 Water bridges: A:T.125, A:K.195, A:E.198, A:E.198, A:E.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roehrig, S. et al., Design and Preclinical Characterization Program toward Asundexian (BAY 2433334), an Oral Factor XIa Inhibitor for the Prevention and Treatment of Thromboembolic Disorders. J.Med.Chem. (2023)

Release Date

2023-09-13

Peptides

Coagulation factor XIa light chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Coagulation factor XIa light chain

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