- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 5 residues within 4Å:- Chain A: P.214, S.216, N.261, T.264, E.268
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.261
- Water bridges: A:H.186
NAG.6: 4 residues within 4Å:- Chain A: N.198, A.225, T.228, W.229
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:T.228, A:W.229
- Hydrogen bonds: A:N.198, A:W.229, A:W.229
NAG.9: 3 residues within 4Å:- Chain A: N.49, R.296, T.315
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.49, A:T.315
NAG.14: 5 residues within 4Å:- Chain A: Q.362, N.486, T.488, N.501, N.503
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.362, A:N.501, A:N.503
- Water bridges: A:N.486
NAG.18: 4 residues within 4Å:- Chain B: P.214, N.261, T.264, E.268
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.261
- Water bridges: B:N.261, B:N.261, B:T.263
NAG.22: 3 residues within 4Å:- Chain B: N.49, R.296, T.315
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.49
NAG.23: 4 residues within 4Å:- Chain B: N.198, A.225, T.228, W.229
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:T.228, B:W.229
- Hydrogen bonds: B:N.198, B:W.229
NAG.24: 5 residues within 4Å:- Chain B: Q.362, R.484, N.486, N.501, N.503
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Q.362, B:N.501
- Water bridges: B:N.486, B:N.486, B:N.503
- 9 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.5: 6 residues within 4Å:- Chain A: M.39, S.42, S.43, L.279, D.281, P.282
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.42
PEG.7: 7 residues within 4Å:- Chain A: S.382, A.383, L.385, N.386, G.468, Y.469, N.470
1 PLIP interactions:1 interactions with chain A- Water bridges: A:Y.469
PEG.10: 4 residues within 4Å:- Chain A: I.46, K.48
- Chain B: F.103, Y.104
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.48
PEG.12: 3 residues within 4Å:- Chain A: G.626, N.627
- Ligands: GOL.11
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.627
PEG.13: 1 residues within 4Å:- Chain A: E.591
No protein-ligand interaction detected (PLIP)PEG.15: 3 residues within 4Å:- Chain A: F.86, R.276
- Chain B: R.276
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.276, A:R.276
PEG.16: 5 residues within 4Å:- Chain A: F.103, Y.104
- Chain B: I.46, K.48, Q.50
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.48
PEG.19: 6 residues within 4Å:- Chain B: M.39, S.42, S.43, L.279, A.280, P.282
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.42
- Water bridges: B:S.42
PEG.20: 5 residues within 4Å:- Chain B: S.382, A.383, N.386, G.468, N.470
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.470
- Water bridges: B:Y.469
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.8: 8 residues within 4Å:- Chain A: D.101, A.102, Y.149, Q.381, T.409, M.450, Y.453, Y.460
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.381, A:T.409, A:Y.453, A:Y.453
- Water bridges: A:A.102
GOL.11: 1 residues within 4Å:- Ligands: PEG.12
No protein-ligand interaction detected (PLIP)GOL.21: 8 residues within 4Å:- Chain B: D.101, A.102, Y.149, Q.381, T.409, M.450, Y.453, Y.460
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.101, B:Y.149, B:Q.381, B:T.409, B:Y.453
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tjallinks, G. et al., Structure elucidation and characterization of patulin synthase, insights into the formation of a fungal mycotoxin. Febs J. (2023)
- Release Date
- 2023-09-06
- Peptides
- Patulin synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 9 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tjallinks, G. et al., Structure elucidation and characterization of patulin synthase, insights into the formation of a fungal mycotoxin. Febs J. (2023)
- Release Date
- 2023-09-06
- Peptides
- Patulin synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
E