SMTL ID : 8bz5.2 (1 other biounit)

Crystal structure of the L. monocytogenes RmlT in complex with HEPES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

10 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 8 residues within 4Å: Chain A: L.169, P.170, M.171, W.197, D.199, V.200, H.269, W.270 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:M.171 Water bridges: A:W.270 Salt bridges: A:D.199, A:D.199, A:H.269 EPE.2: 5 residues within 4Å: Chain A: D.351, A.352, Y.353, K.355, K.495 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.353, A:Y.353, A:K.495, A:K.495 Salt bridges: A:D.351, A:D.351, A:K.355 pi-Cation interactions: A:Y.353 EPE.3: 6 residues within 4Å: Chain A: W.146, R.419, D.471, R.485, A.486, L.513 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.419, A:A.486 Water bridges: A:R.485 Salt bridges: A:R.485 EPE.4: 4 residues within 4Å: Chain A: G.277, G.280, Q.281, K.321 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.281 Salt bridges: A:K.321 EPE.5: 11 residues within 4Å: Chain B: L.169, P.170, M.171, T.172, W.197, D.199, V.200, W.224, H.269, W.270, R.274 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:M.171 Salt bridges: B:D.199, B:D.199, B:H.269, B:R.274 EPE.6: 8 residues within 4Å: Chain B: R.419, Y.507, N.509, A.510, S.511, L.513, V.522 Ligands: EPE.9 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.507, B:A.510, B:S.511 Salt bridges: B:R.419 EPE.7: 8 residues within 4Å: Chain B: Y.29, D.60, N.87, S.88, G.89, W.90, G.91, S.92 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.89, B:G.91 Salt bridges: B:D.60, B:D.60 EPE.8: 5 residues within 4Å: Chain B: D.351, A.352, Y.353, K.355, K.495 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.353, B:K.495, B:K.495 Salt bridges: B:D.351, B:K.355 pi-Cation interactions: B:Y.353 EPE.9: 6 residues within 4Å: Chain B: W.146, R.485, A.486, S.511, L.513 Ligands: EPE.6 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:W.146, B:A.486 Water bridges: B:R.485, B:R.485 Salt bridges: B:R.485 EPE.10: 5 residues within 4Å: Chain B: S.273, G.277, G.280, Q.281, K.321 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.281 Salt bridges: B:K.321

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Monteiro, R. et al., Crystal structure of the L. monocytogenes RmlT in complex with HEPES. To Be Published

Release Date

2023-12-27

Peptides

Glycosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
B

Glycosyltransferase

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