- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)
- 12 x ACT: ACETATE ION(Non-functional Binders)
ACT.2: 4 residues within 4Å:- Chain A: F.153, S.154, A.217, D.218
2 PLIP interactions:2 interactions with chain A- Water bridges: A:N.156, A:N.156
ACT.4: 5 residues within 4Å:- Chain A: I.460, L.461, D.462, A.463, K.466
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:K.466
ACT.5: 5 residues within 4Å:- Chain A: I.492, L.493, I.494, K.495
- Chain B: Q.338
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.492, A:I.494
- Salt bridges: A:K.495
ACT.6: 1 residues within 4Å:- Chain A: D.575
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:D.575
- Hydrogen bonds: A:D.575, A:D.575
ACT.7: 9 residues within 4Å:- Chain A: K.139, S.147, W.148, G.149, W.150, F.153, T.424, W.425, K.426
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:W.150
- Hydrogen bonds: A:W.148, A:T.424, A:T.424
- Salt bridges: A:K.139
ACT.8: 3 residues within 4Å:- Chain A: D.218, W.425, D.458
No protein-ligand interaction detected (PLIP)ACT.10: 5 residues within 4Å:- Chain B: D.218, W.425, D.458, Y.459
- Ligands: ACT.16
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:W.425, B:Y.459
ACT.12: 5 residues within 4Å:- Chain B: I.460, L.461, D.462, A.463, K.466
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:I.460
ACT.13: 5 residues within 4Å:- Chain A: Q.338
- Chain B: I.492, L.493, I.494, K.495
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:I.492, B:I.494
- Salt bridges: A:K.335
ACT.14: 2 residues within 4Å:- Chain B: A.574, D.575
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:D.575
- Hydrogen bonds: B:D.575
ACT.15: 9 residues within 4Å:- Chain B: K.139, S.147, W.148, G.149, W.150, F.153, T.424, W.425, K.426
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:W.150
- Hydrogen bonds: B:W.148, B:F.153, B:T.424
- Water bridges: B:K.139
- Salt bridges: B:K.139
ACT.16: 4 residues within 4Å:- Chain B: S.154, A.217, D.218
- Ligands: ACT.10
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:D.218
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 3 residues within 4Å:- Chain A: D.113, D.114
- Ligands: UPG.1
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.113, A:D.113, H2O.1, H2O.1
MG.11: 3 residues within 4Å:- Chain B: D.113, D.114
- Ligands: UPG.9
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.113, B:D.113, H2O.5, H2O.6
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Monteiro, R. et al., Crystal structure of the L. monocytogenes RmlT in complex with UDP-glucose. To Be Published
- Release Date
- 2023-12-27
- Peptides
- Glycosyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)
- 12 x ACT: ACETATE ION(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Monteiro, R. et al., Crystal structure of the L. monocytogenes RmlT in complex with UDP-glucose. To Be Published
- Release Date
- 2023-12-27
- Peptides
- Glycosyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D