SMTL ID : 8bzk.1

Crystal structure of Paradendryphiella salina PL7C alginate lyase with sulphate bound in the active site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: Q.47, R.218, K.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.47 Salt bridges: A:R.218, A:K.220 SO4.2: 5 residues within 4Å: Chain A: K.20, Q.22, R.66, E.75 Ligands: SO4.5 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.22 Water bridges: A:K.20, A:K.20, A:Y.200, A:Y.200 Salt bridges: A:K.20, A:R.66 SO4.3: 4 residues within 4Å: Chain A: R.62, H.110, P.115, Y.206 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.206 Water bridges: A:R.62, A:R.62, A:Q.108, A:H.110 Salt bridges: A:R.62, A:H.110 SO4.4: 2 residues within 4Å: Chain A: F.2, L.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.3 SO4.5: 8 residues within 4Å: Chain A: Q.22, S.26, R.62, R.66, H.110, Y.200, K.202 Ligands: SO4.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.22, A:Y.200 Water bridges: A:R.62, A:Y.200, A:Y.200 Salt bridges: A:R.62, A:H.110, A:K.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilkens, C., Crystal structure of Paradendryphiella salina PL7C alginate lyase with sulphate bound in the active site. To Be Published

Release Date

2023-12-27

Peptides

Alginate lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alginate lyase

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