SMTL ID : 8pc3.1

Crystal structure of Paradendryphiella salina PL7C alginate lyase in complex with pentamannuronic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x MAV- BEM- BEM: beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid

MAV-BEM-BEM.1: 11 residues within 4Å: Chain A: P.115, R.118, K.125, S.126, T.139, R.141, F.151, K.153, Y.206, N.208, N.209 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.125, A:R.118, A:R.118, A:Y.206, A:N.209 Water bridges: A:S.126, A:S.126, A:R.141, A:Y.206, A:N.208 Salt bridges: A:K.125, A:K.153, A:R.118, A:R.141

1 x BEM- LGU- BEM: beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid

BEM-LGU-BEM.2: 10 residues within 4Å: Chain A: K.20, Q.22, S.26, A.27, R.62, R.66, E.75, H.110, Y.200, K.202 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.22, A:S.26, A:S.26, A:R.62, A:R.62, A:H.110, A:Y.200, A:Y.200, A:K.202, A:K.20, A:Q.22 Water bridges: A:S.26, A:Q.108, A:Y.206, A:Y.206, A:Y.206, A:R.66 Salt bridges: A:R.62, A:K.20, A:R.66

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: D.48 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: P.95, E.96, Q.97, V.98, R.218 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: L.3, T.4, Y.45, L.46 Ligand excluded by PLIP CL.6: 8 residues within 4Å: Chain A: A.88, M.107, Q.108, I.168, F.201, K.202, A.203, W.226 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilknes, C., Crystal structure of Paradendryphiella salina PL7C alginate lyase in complex with pentamannuronic acid. To Be Published

Release Date

2023-07-12

Peptides

Alginate lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alginate lyase

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