SMTL ID : 8c6l.1

Human protein kinase CK2 alpha in complex with CK2-TN01

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: K.229, F.232, F.233, F.284 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.229

1 x TO6: 5-azanyl-3-[(~{Z})-1-cyano-2-(3-methoxy-4-oxidanyl-phenyl)ethenyl]-3~{H}-pyrazole-4-carbonitrile

TO6.2: 13 residues within 4Å: Chain A: L.45, V.53, V.66, K.68, E.81, F.113, E.114, H.115, V.116, N.118, M.163, I.174, D.175 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.53, A:V.66, A:V.66, A:F.113, A:I.174, A:I.174 Hydrogen bonds: A:K.68, A:E.81, A:V.116, A:V.116, A:N.118, A:D.175 Water bridges: A:N.117

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: D.253, R.278, R.306, Y.307, D.308 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.307, A:D.308 Water bridges: A:R.306, A:R.306, A:S.311 Salt bridges: A:R.278, A:R.306 SO4.4: 3 residues within 4Å: Chain A: R.80, R.155, N.189 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.189 Water bridges: A:R.155, A:E.180, A:N.189 Salt bridges: A:R.80, A:R.155 SO4.5: 3 residues within 4Å: Chain A: R.191, K.198, N.238 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.191, A:N.238 Water bridges: A:K.198, A:K.198 Salt bridges: A:R.191, A:K.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cazzanelli, G. et al., Switching off CK2-mediated activation of survivin offers new therapeutic opportunities in neuroblastoma. to be published

Release Date

2024-04-24

Peptides

Casein kinase II subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase II subunit alpha

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