SMTL ID : 8c6m.1

Human protein kinase CK2 alpha in complex with CK2-TN02

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x TNO: (5~{Z})-5-[(3-methoxy-4-oxidanyl-phenyl)methylidene]-1,3-thiazolidine-2,4-dione

TNO.1: 11 residues within 4Å: Chain A: V.53, V.66, K.68, I.95, F.113, E.114, H.115, V.116, M.163, I.174, D.175 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.66, A:V.66, A:I.95, A:F.113, A:F.113, A:I.174 Hydrogen bonds: A:V.116, A:D.175, A:D.175 Water bridges: A:W.176, A:W.176

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: D.253, R.278, R.306, Y.307, D.308 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.307, A:D.308 Water bridges: A:R.278, A:R.306 Salt bridges: A:R.278, A:R.306 SO4.3: 4 residues within 4Å: Chain A: R.80, R.155, N.189, V.192 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.189 Water bridges: A:K.77, A:E.180, A:N.189, A:N.189 Salt bridges: A:R.80, A:R.155 SO4.4: 3 residues within 4Å: Chain A: R.191, K.198, N.238 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.191, A:N.238 Salt bridges: A:R.191, A:K.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cazzanelli, G. et al., Switching off CK2-mediated activation of survivin offers new therapeutic opportunities in neuroblastoma. to be published

Release Date

2024-04-24

Peptides

Casein kinase II subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase II subunit alpha

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