SMTL ID : 8c7h.1

Cryo-EM Map of the latTGF-beta 28G11 Fab complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-1-1-1-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain E: H.162, N.184, R.187, V.203, W.228 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 10 residues within 4Å: Chain C: L.11 Chain E: R.232, E.233, Y.250, N.252, N.255, N.300, D.302 Ligands: NAG-NAG-BMA.3, NAG-NAG-BMA.3 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain E Hydrophobic interactions: C:L.11 Hydrogen bonds: E:N.255 NAG-NAG-BMA.3: 7 residues within 4Å: Chain E: N.300, D.302, F.324, N.326, L.348 Ligands: NAG-NAG-BMA.2, NAG-NAG-BMA.2 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:F.324 Hydrogen bonds: E:N.300

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Igney, F.H. et al., Anti-GARP Antibodies Inhibit Release of TGF-beta by Regulatory T Cells via Different Modes of Action, but Do Not Influence Their Function In Vitro. Immunohorizons (2023)

Release Date

2023-03-01

Peptides

Transforming growth factor beta-1: AC
Transforming growth factor beta-1: BD
Transforming growth factor beta activator LRRC32: E
28G11 Fab heavy chain: F
28G11 Fab light chain: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

E
I

F
L

G
K

Transforming growth factor beta-1

Transforming growth factor beta-1

Transforming growth factor beta activator LRRC32

28G11 Fab heavy chain

28G11 Fab light chain

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