SMTL ID : 8ce9.1 (1 other biounit)

Crystal structure of human Cd11b I domain in C121 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: F.136, G.137, D.138 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.137 Water bridges: A:K.135 SO4.7: 5 residues within 4Å: Chain A: K.135, G.141, Y.142, E.143, T.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.142, A:E.143 Salt bridges: A:K.135

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: A.149, D.150, G.153, V.154, I.155, R.156, S.179 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.153, A:V.154, A:R.156, A:R.156 EDO.3: 3 residues within 4Å: Chain A: P.37, H.38, R.41 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.41, A:R.41 Water bridges: A:H.38 EDO.4: 9 residues within 4Å: Chain A: R.42, E.45, F.46, F.192, E.193, A.194, L.195, K.196, Q.199 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.46, A:F.192, A:L.195, A:K.196, A:K.196 EDO.5: 7 residues within 4Å: Chain A: S.67, E.68, E.69, L.95, L.96, G.97, R.98 No protein-ligand interaction detected (PLIP) EDO.6: 4 residues within 4Å: Chain A: R.41, K.44, E.45, K.90 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.44, A:K.90 EDO.8: 5 residues within 4Å: Chain A: S.34, D.132, G.133, G.162, A.164 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.132, A:A.164 EDO.9: 7 residues within 4Å: Chain A: K.196, T.197, I.198, Q.199, N.200, Q.201 Ligands: EDO.12 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.199, A:N.200, A:N.200, A:Q.201, A:Q.201 EDO.10: 3 residues within 4Å: Chain A: R.120, K.121, N.122 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.121, A:N.122 EDO.11: 5 residues within 4Å: Chain A: R.71, H.73, P.91, I.92, T.93 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.73, A:T.93, A:T.93 Water bridges: A:R.71, A:H.73 EDO.12: 4 residues within 4Å: Chain A: T.197, I.198, Q.201 Ligands: EDO.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koekemoer, L. et al., Crystal structure of human Cd11b I domain in C121 space group. To Be Published

Release Date

2023-03-22

Peptides

Integrin alpha-M: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Integrin alpha-M

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