SMTL ID : 8ce9.2 (1 other biounit)

Crystal structure of human Cd11b I domain in C121 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: S.22, N.122, A.123, F.124 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.22, A:S.22 EDO.3: 3 residues within 4Å: Chain A: H.73, I.92, T.93 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.73, A:T.93 EDO.4: 7 residues within 4Å: Chain A: S.34, I.35, I.36, D.39, D.132, G.162, F.192 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.36, A:D.39 Water bridges: A:D.132, A:D.132 EDO.7: 8 residues within 4Å: Chain A: F.113, N.114, I.115, A.119, R.120, K.121, K.125 Ligands: SO4.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.125 EDO.8: 7 residues within 4Å: Chain A: D.150, G.153, V.154, I.155, R.156, S.179, K.180 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.150, A:R.156, A:R.156 Water bridges: A:K.180, A:K.180 EDO.9: 4 residues within 4Å: Chain A: E.193, A.194, K.196, T.197 No protein-ligand interaction detected (PLIP) EDO.10: 3 residues within 4Å: Chain A: S.34, R.98, F.136 No protein-ligand interaction detected (PLIP) EDO.11: 1 residues within 4Å: Chain A: E.134 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.134 EDO.12: 7 residues within 4Å: Chain A: N.122, A.123, F.124, K.125, E.152, G.153 Ligands: SO4.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.122, A:G.153 Water bridges: A:N.122 EDO.13: 9 residues within 4Å: Chain A: R.42, E.45, F.46, F.192, E.193, A.194, L.195, K.196, Q.199 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.193, A:L.195, A:K.196

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: H.38, R.41, R.42 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:H.38, A:R.41, A:R.42 SO4.5: 5 residues within 4Å: Chain A: K.121, N.122, K.125 Ligands: EDO.7, EDO.12 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.122 Water bridges: A:N.122 Salt bridges: A:K.121 SO4.6: 3 residues within 4Å: Chain A: P.37, H.38, R.41 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.38 Salt bridges: A:R.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koekemoer, L. et al., Crystal structure of human Cd11b I domain in C121 space group. To Be Published

Release Date

2023-03-22

Peptides

Integrin alpha-M: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Integrin alpha-M

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