- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- hetero-2-2-1-1-mer
- Ligands
- 2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
CA.3: 6 residues within 4Å:- Chain A: D.39, T.41, G.44, G.45, F.49, E.55
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.39, A:D.39, A:T.41, A:G.44, A:E.55
CA.7: 5 residues within 4Å:- Chain B: D.39, T.41, G.44, D.47, E.55
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.39, B:D.39, B:T.41, B:E.55, B:E.55
- 1 x VLB: (2ALPHA,2'BETA,3BETA,4ALPHA,5BETA)-VINCALEUKOBLASTINE(Non-covalent)
VLB.4: 22 residues within 4Å:- Chain B: L.248, P.325, V.328, N.329, I.332, A.333, F.351, V.353, G.354, I.355
- Chain F: P.173, K.174, V.175, S.176, D.177, Y.208, T.218, T.219, P.220, T.221, Y.222, L.225
16 PLIP interactions:11 interactions with chain B, 5 interactions with chain F- Hydrophobic interactions: B:L.248, B:P.325, B:P.325, B:V.328, B:I.332, B:I.332, B:F.351, B:V.353, B:I.355, F:V.175, F:Y.222, F:L.225
- Hydrogen bonds: B:N.329, B:N.329, F:P.220
- Salt bridges: F:D.177
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.8: 17 residues within 4Å:- Chain C: G.10, Q.11, C.12, Q.15, S.138, G.141, G.142, T.143, G.144, V.169, V.175, S.176, E.181, N.204, Y.222, L.225, N.226
16 PLIP interactions:16 interactions with chain C- Hydrogen bonds: C:Q.11, C:Q.11, C:C.12, C:N.99, C:S.138, C:G.141, C:G.142, C:T.143, C:T.143, C:G.144, C:S.176, C:E.181, C:N.204, C:N.204, C:N.226, C:N.226
GDP.9: 18 residues within 4Å:- Chain F: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, G.141, G.142, T.143, G.144, V.175, S.176, E.181, N.204, Y.222, L.225, N.226
15 PLIP interactions:15 interactions with chain F- Hydrogen bonds: F:Q.11, F:C.12, F:S.138, F:G.142, F:T.143, F:T.143, F:G.144, F:S.176, F:S.176, F:E.181, F:N.204, F:N.204, F:N.226, F:N.226
- pi-Stacking: F:Y.222
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wranik, M. et al., A multi-reservoir extruder for time-resolved serial protein crystallography and compound screening at X-ray free-electron lasers. Nat Commun (2023)
- Release Date
- 2023-12-13
- Peptides
- Tubulin alpha-1B chain: AB
Tubulin beta-2B chain: CF
Stathmin-4: D
Tubulin-Tyrosine Ligase: E - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
DF
BD
EE
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- hetero-2-2-1-1-mer
- Ligands
- 2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- 1 x VLB: (2ALPHA,2'BETA,3BETA,4ALPHA,5BETA)-VINCALEUKOBLASTINE(Non-covalent)
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wranik, M. et al., A multi-reservoir extruder for time-resolved serial protein crystallography and compound screening at X-ray free-electron lasers. Nat Commun (2023)
- Release Date
- 2023-12-13
- Peptides
- Tubulin alpha-1B chain: AB
Tubulin beta-2B chain: CF
Stathmin-4: D
Tubulin-Tyrosine Ligase: E - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
DF
BD
EE
F