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SMTL ID : 8crg.1
(1 other biounit)
E. coli adenylate kinase in complex with two ADP molecules as a result of enzymatic AP4A hydrolysis
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.49 Å
Oligo State
monomer
Ligands
2 x
ADP
:
ADENOSINE-5'-DIPHOSPHATE
(Non-covalent)
ADP.1:
24 residues within 4Å:
Chain A:
A.8
,
P.9
,
G.10
,
A.11
,
G.12
,
K.13
,
G.14
,
T.15
,
Q.16
,
R.119
,
I.120
,
R.123
,
R.124
,
V.132
,
Y.133
,
H.134
,
F.137
,
N.138
,
G.198
,
K.200
,
P.201
,
V.202
,
V.205
Ligands:
ADP.2
18
PLIP interactions
:
18 interactions with chain A
Hydrogen bonds:
A:G.10
,
A:A.11
,
A:G.12
,
A:K.13
,
A:G.14
,
A:T.15
,
A:T.15
,
A:R.119
,
A:Y.133
,
A:K.200
Water bridges:
A:D.84
,
A:R.123
,
A:N.138
,
A:R.156
Salt bridges:
A:K.13
,
A:R.123
,
A:R.123
pi-Cation interactions:
A:R.119
ADP.2:
23 residues within 4Å:
Chain A:
P.9
,
G.10
,
K.13
,
T.31
,
G.32
,
L.35
,
R.36
,
I.52
,
M.53
,
K.57
,
L.58
,
V.59
,
V.64
,
G.85
,
F.86
,
P.87
,
R.88
,
Q.92
,
R.123
,
R.156
,
D.158
,
R.167
Ligands:
ADP.1
29
PLIP interactions
:
29 interactions with chain A
Hydrogen bonds:
A:G.10
,
A:T.31
,
A:K.57
,
A:K.57
,
A:V.59
,
A:R.88
,
A:R.88
,
A:Q.92
,
A:Q.92
,
A:R.167
Water bridges:
A:K.13
,
A:G.14
,
A:G.32
,
A:G.32
,
A:R.36
,
A:D.84
,
A:R.88
,
A:R.88
,
A:R.88
,
A:R.156
Salt bridges:
A:K.13
,
A:R.36
,
A:R.88
,
A:R.88
,
A:R.123
,
A:R.156
,
A:R.156
,
A:R.167
pi-Cation interactions:
A:R.88
1 x
MPO
:
3[N-MORPHOLINO]PROPANE SULFONIC ACID
(Non-covalent)
MPO.3:
9 residues within 4Å:
Chain A:
I.65
,
V.68
,
K.69
,
I.72
,
F.86
,
A.95
,
M.96
,
A.99
,
I.101
4
PLIP interactions
:
4 interactions with chain A
Hydrophobic interactions:
A:K.69
,
A:A.99
Water bridges:
A:K.69
Salt bridges:
A:K.69
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Tischlik, S. et al., Insights into Enzymatic Catalysis from Binding and Hydrolysis of Diadenosine Tetraphosphate by E. coli Adenylate Kinase. Biochemistry (2023)
Release Date
2023-06-14
Peptides
Adenylate kinase:
A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
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Adenylate kinase
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|
1ake.2
|
1ank.1
|
1ank.2
|
2eck.1
|
2eck.2
|
3hpq.1
|
3hpq.2
|
4ake.1
|
4jzk.1
|
4jzk.2
|
6f7u.1
|
7apu.1
|
7apu.2
|
8crg.2
|
8rj4.1
|
8rj4.2
|
8rj4.3
|
8rj4.4
|
8rj6.1
|
8rj6.2
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