- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-mer
- Ligands
- 12 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)(Non-functional Binders)
- 50 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)(Non-functional Binders)
NAG.13: 7 residues within 4Å:- Chain A: Y.28, F.59, S.60, N.61, L.629, T.630, P.631
Ligand excluded by PLIPNAG.14: 2 residues within 4Å:- Chain A: V.171, S.172
Ligand excluded by PLIPNAG.15: 6 residues within 4Å:- Chain A: N.331, I.332, S.530, T.531, N.532, Q.580
Ligand excluded by PLIPNAG.16: 3 residues within 4Å:- Chain A: E.309, N.603, T.604
Ligand excluded by PLIPNAG.17: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPNAG.18: 2 residues within 4Å:- Chain A: H.655, N.657
Ligand excluded by PLIPNAG.19: 4 residues within 4Å:- Chain A: N.709, N.710, I.1130, G.1131
Ligand excluded by PLIPNAG.20: 6 residues within 4Å:- Chain A: A.706, A.713, E.1072, K.1073, N.1074
- Chain C: Q.895
Ligand excluded by PLIPNAG.21: 4 residues within 4Å:- Chain A: N.717, T.719, L.922, Q.1071
Ligand excluded by PLIPNAG.22: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPNAG.23: 4 residues within 4Å:- Chain A: K.795, N.801, S.803, Q.804
Ligand excluded by PLIPNAG.24: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPNAG.25: 3 residues within 4Å:- Chain A: N.148, N.149, W.152
Ligand excluded by PLIPNAG.26: 1 residues within 4Å:- Chain A: N.234
Ligand excluded by PLIPNAG.27: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPNAG.28: 2 residues within 4Å:- Chain A: G.339, N.343
Ligand excluded by PLIPNAG.29: 1 residues within 4Å:- Ligands: NAG.36
Ligand excluded by PLIPNAG.30: 5 residues within 4Å:- Chain B: Y.28, S.60, N.61, T.630, P.631
Ligand excluded by PLIPNAG.31: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPNAG.32: 5 residues within 4Å:- Chain B: N.331, P.579, Q.580, T.581, L.582
Ligand excluded by PLIPNAG.33: 2 residues within 4Å:- Chain B: N.603, T.604
Ligand excluded by PLIPNAG.34: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPNAG.35: 3 residues within 4Å:- Chain B: H.655, V.656, N.657
Ligand excluded by PLIPNAG.36: 1 residues within 4Å:- Ligands: NAG.29
Ligand excluded by PLIPNAG.37: 6 residues within 4Å:- Chain A: Q.895
- Chain B: A.706, A.713, E.1072, K.1073, N.1074
Ligand excluded by PLIPNAG.38: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPNAG.39: 3 residues within 4Å:- Chain B: F.342, N.343, F.374
Ligand excluded by PLIPNAG.40: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPNAG.41: 4 residues within 4Å:- Chain B: N.280, E.281, N.282
- Chain C: K.558
Ligand excluded by PLIPNAG.42: 2 residues within 4Å:- Chain B: G.199, N.234
Ligand excluded by PLIPNAG.43: 5 residues within 4Å:- Chain B: T.114, Q.115, N.164, N.165
- Chain C: F.464
Ligand excluded by PLIPNAG.44: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPNAG.45: 1 residues within 4Å:- Chain C: T.345
Ligand excluded by PLIPNAG.46: 4 residues within 4Å:- Chain C: Y.28, T.29, N.61, T.630
Ligand excluded by PLIPNAG.47: 1 residues within 4Å:- Ligands: NAG.55
Ligand excluded by PLIPNAG.48: 4 residues within 4Å:- Chain A: K.558
- Chain C: N.280, E.281, N.282
Ligand excluded by PLIPNAG.49: 4 residues within 4Å:- Chain C: N.331, I.332, S.530, Q.580
Ligand excluded by PLIPNAG.50: 1 residues within 4Å:- Chain C: N.603
Ligand excluded by PLIPNAG.51: 3 residues within 4Å:- Chain C: N.616, T.618, Q.644
Ligand excluded by PLIPNAG.52: 1 residues within 4Å:- Chain C: N.657
Ligand excluded by PLIPNAG.53: 7 residues within 4Å:- Chain B: L.894, Q.895
- Chain C: A.706, A.713, E.1072, K.1073, N.1074
Ligand excluded by PLIPNAG.54: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPNAG.55: 1 residues within 4Å:- Ligands: NAG.47
Ligand excluded by PLIPNAG.56: 3 residues within 4Å:- Chain C: N.148, N.149, W.152
Ligand excluded by PLIPNAG.57: 5 residues within 4Å:- Chain A: F.464, E.465
- Chain C: E.132, N.164, N.165
Ligand excluded by PLIPNAG.58: 3 residues within 4Å:- Chain C: T.108, N.234, T.236
Ligand excluded by PLIPNAG.59: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPNAG.60: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPNAG.61: 1 residues within 4Å:- Ligands: NAG.62
Ligand excluded by PLIPNAG.62: 1 residues within 4Å:- Ligands: NAG.61
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiang, Y. et al., Superimmunity by pan-sarbecovirus nanobodies. Cell Rep (2022)
- Release Date
- 2022-07-06
- Peptides
- Spike glycoprotein: ABC
pan-sarbecovirus nanobody 2-38: DEF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-mer
- Ligands
- 12 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)(Non-functional Binders)
- 50 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiang, Y. et al., Superimmunity by pan-sarbecovirus nanobodies. Cell Rep (2022)
- Release Date
- 2022-07-06
- Peptides
- Spike glycoprotein: ABC
pan-sarbecovirus nanobody 2-38: DEF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F