SMTL ID : 8cza.3 (2 other biounits)

Crystal structure of the first bromodomain (BD1) of human BRDT bound to GXH-IV-075

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.96 Å

Oligo State

homo-dimer

Ligands

1 x ZN1: 4-[(4-{4-chloro-3-[(2-methylpropane-2-sulfonyl)amino]anilino}-5-methylpyrimidin-2-yl)amino]-2-fluoro-N-[1-(14-{3-[(2-{3-fluoro-4-[(piperidin-4-yl)carbamoyl]anilino}-5-methylpyrimidin-4-yl)amino]-5-[(2-methylpropane-2-sulfonyl)amino]phenyl}-14-oxo-4,7,10-trioxa-13-azatetradecanan-1-oyl)piperidin-4-yl]benzamide(Non-covalent)

ZN1.1: 35 residues within 4Å: Chain A: F.24, W.26, P.27, F.28, Q.29, R.30, V.32, K.36, L.37, Q.38, L.39, Y.42, C.81, Y.84, N.85, D.90, I.91, M.94 Chain B: W.26, P.27, F.28, V.32, V.35, K.36, L.37, Q.38, L.39, Y.42, C.81, Y.84, N.85, D.89, D.90, I.91, M.94 30 PLIP interactions: 13 interactions with chain A, 17 interactions with chain B Hydrophobic interactions: A:F.24, A:W.26, A:W.26, A:F.28, A:V.32, A:L.37, A:L.37, A:L.39, A:D.90, B:W.26, B:P.27, B:P.27, B:F.28, B:V.32, B:K.36, B:L.37, B:L.39, B:D.90, B:I.91, B:I.91 Hydrogen bonds: A:P.27, A:L.37, A:N.85, A:N.85, B:P.27, B:K.36, B:Q.38, B:N.85, B:N.85 Halogen bonds: B:K.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guan, X. et al., Bivalent BET Bromodomain Inhibitors Confer Increased Potency and Selectivity for BRDT via Protein Conformational Plasticity. J.Med.Chem. (2022)

Release Date

2022-08-03

Peptides

Bromodomain testis-specific protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Bromodomain testis-specific protein

Related Entries With Identical Sequence