SMTL ID : 8d0a.1

Crystal structure of human USP30 in complex with a covalent inhibitor 829 and a Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.19 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x PKH: ~{N}-[(1~{R},2~{R},4~{S},7~{E})-7-[azanyl(sulfanyl)methylidene]-7$l^{4}-azabicyclo[2.2.1]heptan-2-yl]-2-chloranyl-4-(6-cyclopropylpyrazin-2-yl)benzamide(Covalent)

PKH.1: 14 residues within 4Å: Chain A: N.13, C.15, F.16, F.95, E.96, Q.98, L.232, S.233, H.277, D.280, M.281, G.284, H.285, F.286 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.16, A:Q.98, A:L.232, A:L.232, A:F.286 Hydrogen bonds: A:F.286 Water bridges: A:Q.98

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.138, C.141, C.188, C.191 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.138, A:C.141, A:C.188, A:C.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, X. et al., TBD. To Be Published

Release Date

2023-02-01

Peptides

Ubiquitin carboxyl-terminal hydrolase 30: A
mouse anti-huUSP30 Fab heavy chain: B
mouse anti-huUSP30 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Ubiquitin carboxyl-terminal hydrolase 30

mouse anti-huUSP30 Fab heavy chain

mouse anti-huUSP30 Fab light chain

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