SMTL ID : 8d1t.1

Crystal structure of human USP30 in complex with a covalent inhibitor 552 and a Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.94 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x PXW: (1R,2R,4S,7E)-7-[amino(sulfanyl)methylidene]-2-{[(1P)-3-chloro-3'-(1-cyanocyclopropyl)[1,1'-biphenyl]-4-carbonyl]amino}-7-azabicyclo[2.2.1]heptan-7-ium(Covalent)

PXW.1: 16 residues within 4Å: Chain A: G.12, N.13, C.15, F.16, F.95, E.96, Q.98, L.232, S.233, W.234, P.240, H.277, M.281, G.284, H.285, F.286 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:E.96, A:L.232, A:L.232, A:W.234, A:P.240, A:F.286 Hydrogen bonds: A:C.15, A:E.96, A:F.286

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.138, C.141, C.188, C.191 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.138, A:C.141, A:C.188, A:C.191

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: R.115, S.118, H.121, K.123 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.115, A:K.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, X. et al., TBD. To Be Published

Release Date

2023-02-01

Peptides

Ubiquitin carboxyl-terminal hydrolase 30: A
mouse anti-huUSP30 Fab heavy chain: B
mouse anti-huUSP30 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Ubiquitin carboxyl-terminal hydrolase 30

mouse anti-huUSP30 Fab heavy chain

mouse anti-huUSP30 Fab light chain

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