SMTL ID : 8d0o.1

Human alpha1,3-fucosyltransferase FUT9, heavy atom derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 12 residues within 4Å: Chain A: R.88, P.90, F.91, H.113, L.114, F.115, N.116, Y.310, K.311, S.312 Chain B: P.245, A.246 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.114 Hydrogen bonds: A:Y.310 Water bridges: B:D.247 NAG-NAG.25: 12 residues within 4Å: Chain A: P.245, A.246 Chain B: R.88, P.90, F.91, H.113, L.114, F.115, N.116, Y.310, K.311, S.312 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:D.247 Hydrophobic interactions: B:L.114 Hydrogen bonds: B:Y.310

28 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 2 residues within 4Å: Chain A: P.235, S.236 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: L.194, Y.204, N.222 Ligand excluded by PLIP IOD.4: 1 residues within 4Å: Chain A: N.271 Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain B: W.319 Ligand excluded by PLIP IOD.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: N.170 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: R.291, F.292 Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain A: P.106, Q.107 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain A: N.50, Q.52 Ligand excluded by PLIP IOD.11: 4 residues within 4Å: Chain A: V.142, F.143, R.282, K.283 Ligand excluded by PLIP IOD.12: 3 residues within 4Å: Chain A: I.176, E.177, K.266 Ligand excluded by PLIP IOD.13: 1 residues within 4Å: Chain A: R.291 Ligand excluded by PLIP IOD.14: 2 residues within 4Å: Chain A: T.103, P.106 Ligand excluded by PLIP IOD.15: 1 residues within 4Å: Chain A: N.190 Ligand excluded by PLIP IOD.26: 2 residues within 4Å: Chain B: P.235, S.236 Ligand excluded by PLIP IOD.27: 3 residues within 4Å: Chain B: L.194, Y.204, N.222 Ligand excluded by PLIP IOD.28: 1 residues within 4Å: Chain B: N.271 Ligand excluded by PLIP IOD.29: 1 residues within 4Å: Chain A: W.319 Ligand excluded by PLIP IOD.30: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.31: 1 residues within 4Å: Chain B: N.170 Ligand excluded by PLIP IOD.32: 2 residues within 4Å: Chain B: R.291, F.292 Ligand excluded by PLIP IOD.33: 2 residues within 4Å: Chain B: P.106, Q.107 Ligand excluded by PLIP IOD.34: 2 residues within 4Å: Chain B: N.50, Q.52 Ligand excluded by PLIP IOD.35: 4 residues within 4Å: Chain B: V.142, F.143, R.282, K.283 Ligand excluded by PLIP IOD.36: 3 residues within 4Å: Chain B: I.176, E.177, K.266 Ligand excluded by PLIP IOD.37: 1 residues within 4Å: Chain B: R.291 Ligand excluded by PLIP IOD.38: 2 residues within 4Å: Chain B: T.103, P.106 Ligand excluded by PLIP IOD.39: 1 residues within 4Å: Chain B: N.190 Ligand excluded by PLIP

18 x CS: CESIUM ION(Non-covalent)(Non-functional Binders)

CS.16: 2 residues within 4Å: Chain A: T.43, C.45 Ligand excluded by PLIP CS.17: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CS.18: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CS.19: 2 residues within 4Å: Chain A: N.239, N.242 Ligand excluded by PLIP CS.20: 5 residues within 4Å: Chain A: R.123, S.125 Chain B: R.123, S.125 Ligands: CS.44 Ligand excluded by PLIP CS.21: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CS.22: 1 residues within 4Å: Chain A: S.295 Ligand excluded by PLIP CS.23: 3 residues within 4Å: Chain A: P.102, T.103, T.105 Ligand excluded by PLIP CS.24: 1 residues within 4Å: Chain A: D.269 Ligand excluded by PLIP CS.40: 2 residues within 4Å: Chain B: T.43, C.45 Ligand excluded by PLIP CS.41: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CS.42: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CS.43: 2 residues within 4Å: Chain B: N.239, N.242 Ligand excluded by PLIP CS.44: 5 residues within 4Å: Chain A: R.123, S.125 Chain B: R.123, S.125 Ligands: CS.20 Ligand excluded by PLIP CS.45: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CS.46: 1 residues within 4Å: Chain B: S.295 Ligand excluded by PLIP CS.47: 3 residues within 4Å: Chain B: P.102, T.103, T.105 Ligand excluded by PLIP CS.48: 1 residues within 4Å: Chain B: D.269 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kadirvelraj, R. et al., Structural basis for Lewis antigen synthesis by the alpha 1,3-fucosyltransferase FUT9. Nat.Chem.Biol. (2023)

Release Date

2023-05-24

Peptides

4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9

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