SMTL ID : 8d0p.1

Human FUT9, unliganded

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.09 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 18 residues within 4Å: Chain A: R.88, P.90, F.91, Q.92, K.93, H.113, L.114, F.115, N.116, Y.310, K.311, S.312 Chain B: R.237, P.245, A.246, D.247, F.285 Ligands: SO4.11 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Water bridges: B:E.241, B:R.237, B:R.237, A:H.113 Hydrophobic interactions: A:L.114 NAG-NAG-BMA-MAN.7: 18 residues within 4Å: Chain A: R.237, P.245, A.246, D.247, F.285 Chain B: R.88, P.90, F.91, Q.92, K.93, H.113, L.114, F.115, N.116, Y.310, K.311, S.312 Ligands: SO4.5 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Water bridges: A:E.241, A:R.237, A:R.237, B:H.113 Hydrophobic interactions: B:L.114

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: L.42, T.43, S.44, C.45, Q.46, A.47, C.54 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.42, A:C.45, A:Q.46, A:Q.46 Water bridges: A:C.54 SO4.3: 3 residues within 4Å: Chain A: P.290, R.291, F.292 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.290, A:F.292 Salt bridges: A:R.291 SO4.4: 3 residues within 4Å: Chain A: W.159, A.184, F.185 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.169 SO4.5: 5 residues within 4Å: Chain A: D.247, L.274, S.277, Y.278 Ligands: NAG-NAG-BMA-MAN.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.277 Water bridges: A:Y.278 SO4.8: 7 residues within 4Å: Chain B: L.42, T.43, S.44, C.45, Q.46, A.47, C.54 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.42, B:C.45, B:Q.46, B:Q.46 Water bridges: B:C.54 SO4.9: 3 residues within 4Å: Chain B: P.290, R.291, F.292 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.290, B:F.292 Salt bridges: B:R.291 SO4.10: 3 residues within 4Å: Chain B: W.159, A.184, F.185 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Y.169 SO4.11: 5 residues within 4Å: Chain B: D.247, L.274, S.277, Y.278 Ligands: NAG-NAG-BMA-MAN.1 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.277 Water bridges: B:Y.278

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 5 residues within 4Å: Chain A: P.102, I.211, H.212, K.213, N.322 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.213 Water bridges: A:N.322 EDO.12: 5 residues within 4Å: Chain B: P.102, I.211, H.212, K.213, N.322 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.213 Water bridges: B:N.322

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kadirvelraj, R. et al., Structural basis for Lewis antigen synthesis by the alpha 1,3-fucosyltransferase FUT9. Nat.Chem.Biol. (2023)

Release Date

2023-05-24

Peptides

4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9

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