- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 1 x ZGS: [(2~{R})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] (9~{Z},12~{Z},15~{Z})-octadeca-9,12,15-trienoate(Non-covalent)
- 15 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.2: 7 residues within 4Å:- Chain A: D.133, Q.134, G.135, V.137, V.138
- Ligands: LMT.5, LMT.16
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:V.137, A:V.138
- Hydrogen bonds: A:D.133, A:Q.134, A:Q.134
LMT.3: 6 residues within 4Å:- Chain A: I.193, I.197, A.201, D.234, I.241
- Ligands: LMT.4
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.193, A:I.197
- Hydrogen bonds: A:D.234
LMT.4: 8 residues within 4Å:- Chain A: F.124, Q.233, N.237, M.240, I.241, V.245, A.248
- Ligands: LMT.3
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:V.245, A:A.248
- Hydrogen bonds: A:N.237
LMT.5: 10 residues within 4Å:- Chain A: V.120, L.121, F.124, L.125, Y.128, P.130, S.131, V.132, W.139
- Ligands: LMT.2
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.121, A:F.124, A:F.124, A:Y.128
- Hydrogen bonds: A:Y.128, A:Y.128, A:S.131
LMT.6: 11 residues within 4Å:- Chain A: S.438, V.441, S.445, E.461, L.464, T.465, I.468, L.469, A.473
- Chain C: A.30, R.31
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:T.465, A:I.468, A:I.468, A:L.469, A:A.473
LMT.7: 13 residues within 4Å:- Chain A: K.39, L.40, A.47, A.177, Y.178, T.181, V.182, L.185, I.189, C.253
- Ligands: LMT.8, LMT.9, LMT.10
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:L.40, A:A.47, A:T.181, A:V.182, A:V.182, A:L.185, A:I.189
- Hydrogen bonds: A:Y.178
LMT.8: 6 residues within 4Å:- Chain A: V.36, L.40, I.44
- Ligands: LMT.7, LMT.9, LMT.15
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.40, A:I.44
LMT.9: 4 residues within 4Å:- Chain A: Y.178, I.189
- Ligands: LMT.7, LMT.8
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:I.189
- Hydrogen bonds: A:Y.178
LMT.10: 7 residues within 4Å:- Chain A: A.177, M.180, T.181, L.185, L.188, Q.344
- Ligands: LMT.7
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:T.181, A:L.185, A:L.188
- Hydrogen bonds: A:T.181, A:Q.344
LMT.11: 8 residues within 4Å:- Chain A: C.37, C.41, V.252, V.255, V.256, L.259, G.260
- Ligands: LMT.15
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:V.252, A:V.252, A:V.255, A:V.256, A:L.259
LMT.12: 7 residues within 4Å:- Chain A: P.101, W.102, T.103, W.111, L.114, L.150
- Ligands: LMT.13
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.114, A:L.114, A:L.150
LMT.13: 5 residues within 4Å:- Chain A: L.96, W.111, T.149, C.153
- Ligands: LMT.12
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:L.96
LMT.14: 6 residues within 4Å:- Chain A: V.371, L.372, L.464, K.467, S.471, I.475
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.371, A:L.372, A:L.464, A:I.475
LMT.15: 8 residues within 4Å:- Chain A: C.37, L.40, C.41, I.44, V.252, V.256
- Ligands: LMT.8, LMT.11
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.40, A:I.44, A:I.44, A:V.252, A:V.256, A:V.256
LMT.16: 10 residues within 4Å:- Chain A: D.71, F.73, Y.74, I.77, V.81
- Chain B: Y.48
- Chain C: L.97, F.102, P.104
- Ligands: LMT.2
8 PLIP interactions:1 interactions with chain B, 7 interactions with chain A- Hydrogen bonds: B:K.54, A:D.71, A:D.71, A:D.71
- Hydrophobic interactions: A:F.73, A:F.73, A:I.77, A:V.81
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nguyen, C. et al., Lipid flipping in the omega-3 fatty-acid transporter. Nat Commun (2023)
- Release Date
- 2023-05-10
- Peptides
- Sodium-dependent lysophosphatidylcholine symporter 1-B: A
FAB light chain: B
FAB heavy chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 1 x ZGS: [(2~{R})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] (9~{Z},12~{Z},15~{Z})-octadeca-9,12,15-trienoate(Non-covalent)
- 15 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nguyen, C. et al., Lipid flipping in the omega-3 fatty-acid transporter. Nat Commun (2023)
- Release Date
- 2023-05-10
- Peptides
- Sodium-dependent lysophosphatidylcholine symporter 1-B: A
FAB light chain: B
FAB heavy chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.