SMTL ID : 8d3k.2 (1 other biounit)

Crystal structure of human Apoptosis-Inducing Factor (AIF) complexed with 8-fluoro-2-methylquinolin-4-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x QC6: 8-fluoro-2-methylquinolin-4-amine(Non-covalent)

QC6.1: 11 residues within 4Å: Chain A: S.100, K.101, F.234, L.235, E.238, E.377, H.378, F.406, W.407, S.408 Ligands: FAD.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.234, A:L.235, A:L.235, A:F.406 Hydrogen bonds: A:S.408, A:S.408 pi-Stacking: A:F.234

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 38 residues within 4Å: Chain A: I.61, G.62, G.63, G.64, T.65, A.66, A.67, V.86, S.87, E.88, D.89, R.96, P.97, L.99, S.100, K.101, K.155, K.156, V.157, A.183, T.184, G.185, G.186, F.208, R.209, L.235, N.327, L.330, G.361, D.362, E.377, H.378, H.379, D.380, A.382, F.406, W.407 Ligands: QC6.1 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:R.96, A:L.99, A:F.208, A:R.209, A:L.235 Hydrogen bonds: A:G.62, A:G.63, A:T.65, A:T.65, A:A.66, A:S.87, A:E.88, A:D.89, A:R.96, A:R.96, A:K.101, A:V.157, A:V.157, A:D.362, A:E.377, A:H.379, A:W.407 Water bridges: A:G.64, A:A.67, A:R.96, A:R.209, A:A.363, A:H.378, A:D.380 Salt bridges: A:R.96, A:R.209

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: G.233, F.234, L.235, G.236, G.323 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.234, A:L.235, A:G.323 Water bridges: A:G.233, A:G.236 SO4.4: 4 residues within 4Å: Chain A: S.190, L.191, S.192, A.193 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.190, A:S.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brosey, C.A. et al., Chemical screening by time-resolved X-ray scattering to discover allosteric probes. Nat.Chem.Biol. (2024)

Release Date

2023-11-08

Peptides

Apoptosis-inducing factor 1, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Apoptosis-inducing factor 1, mitochondrial

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