SMTL ID : 8d3o.1 (1 other biounit)

Crystal structure of human Apoptosis-Inducing Factor (AIF) complexed with 8-methoxyquinolin-4-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x QF6: 8-methoxyquinolin-4-amine(Non-covalent)

QF6.1: 13 residues within 4Å: Chain A: S.100, K.101, R.209, F.234, L.235, E.238, E.377, H.378, F.406, W.407, S.408 Ligands: FAD.3, SO4.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.234, A:L.235 Hydrogen bonds: A:S.100, A:E.238

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: E.337, R.346, V.347, N.348, R.373 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.346, A:R.373

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.3: 40 residues within 4Å: Chain A: I.61, G.62, G.63, G.64, T.65, A.66, A.67, V.86, S.87, E.88, D.89, R.96, P.97, L.99, S.100, K.101, K.155, K.156, V.157, A.183, T.184, G.185, G.186, F.208, R.209, L.235, E.238, N.327, L.330, G.361, D.362, E.377, H.378, H.379, D.380, A.382, F.406, W.407, S.408 Ligands: QF6.1 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:R.96, A:L.99, A:F.208, A:L.235 Hydrogen bonds: A:G.63, A:T.65, A:T.65, A:A.66, A:E.88, A:E.88, A:D.89, A:R.96, A:K.101, A:V.157, A:G.186, A:D.362, A:H.378, A:H.379, A:W.407 Water bridges: A:G.64, A:A.67, A:R.96, A:G.185, A:D.362, A:D.380 Salt bridges: A:R.96, A:R.209

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: M.405, M.509, P.510, R.513 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.513 SO4.5: 1 residues within 4Å: Chain A: R.222 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.222 SO4.6: 7 residues within 4Å: Chain A: G.233, F.234, L.235, G.236, A.321, G.323 Ligands: QF6.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.234, A:L.235 Water bridges: A:G.236, A:G.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brosey, C.A. et al., Integrating early structural selection into chemical library screening for drug discovery with high-throughput small-angle X-ray scattering (SAXS). To Be Published

Release Date

2023-11-08

Peptides

Apoptosis-inducing factor 1, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Apoptosis-inducing factor 1, mitochondrial

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