SMTL ID : 8d5n.1 (1 other biounit)

Crystal structure of Ld-HF10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.86 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.86

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 9 residues within 4Å: Chain A: Y.27, D.29, N.30, A.211, T.233, F.241 Chain C: Y.31, S.60 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain C Water bridges: C:Y.31

1 x PPI: PROPANOIC ACID(Non-covalent)

PPI.3: 3 residues within 4Å: Chain B: N.6, E.7, D.9 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.7 Water bridges: A:W.73

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: E.232 Chain C: S.60, F.61, Y.68 Ligands: PG4.2 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:E.232, C:S.60, C:F.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Peptide Centric V beta Specific Germline Contacts Shape a Specialist T Cell Response. Front Immunol (2022)

Release Date

2022-09-14

Peptides

H-2 class I histocompatibility antigen, L-D alpha chain: A
Dense granule protein 6, HF10 peptide: B
Beta-2-microglobulin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
E

C
H

H-2 class I histocompatibility antigen, L-D alpha chain

Dense granule protein 6, HF10 peptide

Beta-2-microglobulin

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