SMTL ID : 8d5n.2 (1 other biounit)

Crystal structure of Ld-HF10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.86 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.86

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain C: F.35, P.38, I.40, M.59, S.60, F.67, Y.68, I.69 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:P.38, C:S.60, C:S.60, C:Y.68 Water bridges: C:I.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Peptide Centric V beta Specific Germline Contacts Shape a Specialist T Cell Response. Front Immunol (2022)

Release Date

2022-09-14

Peptides

H-2 class I histocompatibility antigen, L-D alpha chain: A
Dense granule protein 6, HF10 peptide: B
Beta-2-microglobulin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
F

H-2 class I histocompatibility antigen, L-D alpha chain

Dense granule protein 6, HF10 peptide

Beta-2-microglobulin

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