SMTL ID : 8dim.1

CryoEM structure of Influenza A virus A/Ohio/09/2015 hemagglutinin bound to CR6261 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: N.104, E.106, N.127, C.130, R.261 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 5 residues within 4Å: Chain C: N.104, E.106, N.127, C.130, R.261 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 5 residues within 4Å: Chain E: N.104, E.106, N.127, C.130, R.261 No protein-ligand interaction detected (PLIP)

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.51 No protein-ligand interaction detected (PLIP) NAG.5: 2 residues within 4Å: Chain A: K.62, N.63 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.62 Hydrogen bonds: A:N.63, A:N.63 NAG.6: 2 residues within 4Å: Chain A: N.521, T.523 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.521 NAG.7: 1 residues within 4Å: Chain C: N.51 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain C: K.62, N.63 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:K.62 Hydrogen bonds: C:N.63 NAG.9: 2 residues within 4Å: Chain C: N.521, T.523 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.521 NAG.10: 1 residues within 4Å: Chain E: N.51 No protein-ligand interaction detected (PLIP) NAG.11: 2 residues within 4Å: Chain E: K.62, N.63 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:K.62 Hydrogen bonds: E:N.63 NAG.12: 2 residues within 4Å: Chain E: N.521, T.523 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.521

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, M. et al., CryoEM structure of Influenza A virus A/Ohio/09/2015 hemagglutinin bound to CR6261 Fab. To Be Published

Release Date

2022-11-16

Peptides

hemagglutinin: ACE
CR6261 Fab heavy chain: BDF
CR6261 Fab light chain: GHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
D

E
G

B
B

D
E

F
H

G
C

H
F

I
I

hemagglutinin

CR6261 Fab heavy chain

CR6261 Fab light chain

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