SMTL ID : 8diu.1

Cryo-EM structure of influenza A virus A/Bayern/7/1995 hemagglutinin bound to CR6261 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 6 residues within 4Å: Chain A: E.106, E.126, N.127, S.177, R.261 Ligands: NAG.9 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 7 residues within 4Å: Chain B: N.104, E.106, E.126, N.127, C.130, R.261 Ligands: NAG.16 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 7 residues within 4Å: Chain C: N.104, E.106, N.127, C.130, S.177, R.261 Ligands: NAG.23 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: D.316, A.317, K.318, N.327 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain B: D.316, A.317, K.318, N.327 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.316 NAG-NAG.6: 4 residues within 4Å: Chain C: D.316, A.317, K.318, N.327 No protein-ligand interaction detected (PLIP)

21 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 1 residues within 4Å: Chain A: N.51 Ligand excluded by PLIP NAG.8: 1 residues within 4Å: Chain A: N.63 Ligand excluded by PLIP NAG.9: 2 residues within 4Å: Chain A: N.94 Ligands: NAG-NAG-BMA.1 Ligand excluded by PLIP NAG.10: 1 residues within 4Å: Chain A: N.165 Ligand excluded by PLIP NAG.11: 1 residues within 4Å: Chain A: N.200 Ligand excluded by PLIP NAG.12: 1 residues within 4Å: Chain A: N.309 Ligand excluded by PLIP NAG.13: 3 residues within 4Å: Chain A: E.514, E.517, N.521 Ligand excluded by PLIP NAG.14: 1 residues within 4Å: Chain B: N.51 Ligand excluded by PLIP NAG.15: 1 residues within 4Å: Chain B: N.63 Ligand excluded by PLIP NAG.16: 2 residues within 4Å: Chain B: N.94 Ligands: NAG-NAG-BMA.3 Ligand excluded by PLIP NAG.17: 1 residues within 4Å: Chain B: N.165 Ligand excluded by PLIP NAG.18: 1 residues within 4Å: Chain B: N.200 Ligand excluded by PLIP NAG.19: 1 residues within 4Å: Chain B: N.309 Ligand excluded by PLIP NAG.20: 3 residues within 4Å: Chain B: E.514, E.517, N.521 Ligand excluded by PLIP NAG.21: 1 residues within 4Å: Chain C: N.51 Ligand excluded by PLIP NAG.22: 1 residues within 4Å: Chain C: N.63 Ligand excluded by PLIP NAG.23: 2 residues within 4Å: Chain C: N.94 Ligands: NAG-NAG-BMA.5 Ligand excluded by PLIP NAG.24: 1 residues within 4Å: Chain C: N.165 Ligand excluded by PLIP NAG.25: 1 residues within 4Å: Chain C: N.200 Ligand excluded by PLIP NAG.26: 1 residues within 4Å: Chain C: N.309 Ligand excluded by PLIP NAG.27: 3 residues within 4Å: Chain C: E.514, E.517, N.521 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, M. et al., CryoEM structure of influenza A virus A/Bayern/7/1995 hemagglutinin bound to CR6261 Fab. To be published

Release Date

2022-12-14

Peptides

hemagglutinin: ABC
CR6261 Fab heavy chain: DEF
CR6261 Fab light chain: GHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

C
B

D
G

E
E

F
H

G
C

H
F

I
I

hemagglutinin

CR6261 Fab heavy chain

CR6261 Fab light chain

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