SMTL ID : 8dk2.1

CryoEM structure of Pseudomonas aeruginosa PA14 JetABC in an unclamped state trapped in ATP dependent dimeric form

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-4-mer

Ligands

2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 20 residues within 4Å: Chain C: P.62, T.63, G.64, S.65, G.66, K.67, T.68, T.69, R.96, S.100, Y.101, V.105, T.106, G.107, R.1088 Chain D: G.1001, S.1003, G.1004, G.1005, E.1006 11 PLIP interactions: 10 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:G.64, C:G.66, C:K.67, C:K.67, C:T.68, C:T.69, C:R.96, C:S.100, C:G.107, C:R.1088, D:S.1003 AGS.3: 15 residues within 4Å: Chain C: G.1001, S.1003, G.1004, G.1005, E.1006 Chain D: G.64, S.65, G.66, K.67, T.68, T.69, R.96, S.100, V.105, G.107 18 PLIP interactions: 14 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:G.64, D:S.65, D:G.66, D:K.67, D:K.67, D:T.68, D:T.69, D:T.69, D:R.96, D:S.100, D:G.107, C:S.1003, C:G.1004, C:G.1005, C:E.1006 Salt bridges: D:K.67, D:R.96 pi-Cation interactions: D:R.96

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain C: N.85, L.86, A.87, S.88 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:N.85, C:L.86 MG.4: 2 residues within 4Å: Chain D: N.85, R.96 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deep, A. et al., The SMC-family Wadjet complex protects bacteria from plasmid transformation by recognition and cleavage of closed-circular DNA. Mol.Cell (2022)

Release Date

2022-10-05

Peptides

JetA: AB
JetC: CD
JetB: EFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
F

F
G

G
H

H
I

JetA

JetC

JetB

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