SMTL ID : 8dk3.1

CryoEM structure of Pseudomonas aeruginosa PA14 JetC ATPase domain bound to DNA and cWHD domain of JetA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-mer

Ligands

2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 19 residues within 4Å: Chain A: T.63, G.64, S.65, G.66, K.67, T.68, T.69, R.96, S.100, Y.101, V.105, G.107, R.1088 Chain B: G.1001, S.1003, G.1004, G.1005, E.1006 Ligands: MG.2 17 PLIP interactions: 15 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.64, A:S.65, A:G.66, A:K.67, A:K.67, A:T.68, A:T.68, A:T.69, A:T.69, A:S.100, A:S.100, A:G.107, A:R.1088, B:S.1003, B:G.1004 Salt bridges: A:K.67 pi-Cation interactions: A:R.96 AGS.3: 17 residues within 4Å: Chain A: G.1001, S.1003, G.1004, G.1005, E.1006 Chain B: T.63, G.64, S.65, G.66, K.67, T.68, T.69, R.96, S.100, V.105, G.107 Ligands: MG.4 19 PLIP interactions: 14 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:G.64, B:S.65, B:G.66, B:K.67, B:K.67, B:T.68, B:T.69, B:T.69, B:R.96, B:S.100, B:G.107, A:S.1003, A:S.1003, A:G.1004, A:G.1005, A:E.1006 Salt bridges: B:K.67, B:R.96 pi-Cation interactions: B:R.96

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.68 Ligands: AGS.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.68 MG.4: 2 residues within 4Å: Chain B: T.68 Ligands: AGS.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deep, A. et al., The SMC-family Wadjet complex protects bacteria from plasmid transformation by recognition and cleavage of closed-circular DNA. Mol.Cell (2022)

Release Date

2022-10-05

Peptides

JetC: AB
JetA: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

JetC

JetA

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