- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-4-1-mer
- Ligands
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
- 15 x HEX: HEXANE(Non-functional Binders)(Non-covalent)
HEX.2: 2 residues within 4Å:- Ligands: UND.3, HEX.13
No protein-ligand interaction detected (PLIP)HEX.7: 2 residues within 4Å:- Chain A: I.355
- Ligands: HP6.8
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:I.355
HEX.13: 5 residues within 4Å:- Chain A: G.221, L.224, I.225
- Ligands: HEX.2, HEX.39
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:L.224
HEX.19: 5 residues within 4Å:- Chain B: I.285, F.348, I.355, Y.356
- Ligands: HEX.20
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:F.348
HEX.20: 4 residues within 4Å:- Chain B: I.285, V.289
- Chain C: I.225
- Ligands: HEX.19
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:I.285, B:V.289
HEX.23: 3 residues within 4Å:- Chain B: F.306
- Chain C: W.243
- Ligands: UND.22
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:W.243, B:F.306
HEX.25: 2 residues within 4Å:- Ligands: HP6.17, DD9.24
No protein-ligand interaction detected (PLIP)HEX.27: 3 residues within 4Å:- Ligands: DD9.32, DD9.35, HP6.46
No protein-ligand interaction detected (PLIP)HEX.28: 2 residues within 4Å:- Chain C: L.224
- Ligands: DD9.29
No protein-ligand interaction detected (PLIP)HEX.31: 2 residues within 4Å:- Chain C: W.243, I.339
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:W.243
HEX.39: 5 residues within 4Å:- Chain A: I.225
- Chain D: I.285, A.288
- Ligands: HEX.13, D10.42
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:I.285
HEX.41: 1 residues within 4Å:- Ligands: UND.40
No protein-ligand interaction detected (PLIP)HEX.43: 4 residues within 4Å:- Chain D: I.339, G.340, M.343, A.344
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:I.339
HEX.50: 4 residues within 4Å:- Chain E: G.243, M.246, M.247
- Ligands: HP6.49
No protein-ligand interaction detected (PLIP)HEX.57: 3 residues within 4Å:- Chain E: V.325, M.329
- Ligands: DD9.56
1 PLIP interactions:1 interactions with chain E- Hydrophobic interactions: E:V.325
- 12 x UND: UNDECANE(Non-covalent)(Covalent)
UND.3: 6 residues within 4Å:- Chain A: M.220, L.224, L.232, N.349, W.353
- Ligands: HEX.2
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.224, A:L.232
UND.4: 6 residues within 4Å:- Chain A: N.349, M.350, W.353, I.354, K.357, I.358
No protein-ligand interaction detected (PLIP)UND.11: 8 residues within 4Å:- Chain A: S.296, L.299, E.300, A.303, R.329, I.333
- Ligands: NBU.10, UND.12
No protein-ligand interaction detected (PLIP)UND.12: 7 residues within 4Å:- Chain A: L.299, F.306, V.307
- Chain E: L.262, W.265
- Ligands: UND.11, HP6.51
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.299, A:F.306
UND.15: 9 residues within 4Å:- Chain B: I.236, W.239, I.240, W.243
- Chain E: V.321, A.324, V.328, M.329
- Ligands: UND.16
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain E- Hydrophobic interactions: B:I.240, E:V.328
UND.16: 4 residues within 4Å:- Chain B: W.239, W.243, I.339
- Ligands: UND.15
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:I.339
UND.22: 8 residues within 4Å:- Chain B: S.296, L.299, E.300, A.303, R.329, F.341
- Ligands: DD9.21, HEX.23
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:L.299, B:E.300
UND.40: 7 residues within 4Å:- Chain A: I.236, I.240, W.243
- Chain D: L.299, F.306
- Ligands: DD9.5, HEX.41
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: A:I.240, A:W.243, D:L.299, D:F.306
UND.44: 7 residues within 4Å:- Chain D: F.293, S.296, I.333, I.336, S.337, F.341
- Ligands: UND.45
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:I.336, D:F.341, D:F.341, D:F.341
UND.45: 7 residues within 4Å:- Chain D: S.296, L.299, E.300, A.303, R.329, I.333
- Ligands: UND.44
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:A.303
UND.54: 6 residues within 4Å:- Chain E: L.669, N.672, V.673, W.676, L.680
- Ligands: NBU.53
2 PLIP interactions:2 interactions with chain E- Hydrophobic interactions: E:L.669, E:L.680
UND.59: 5 residues within 4Å:- Chain E: V.302, V.307, I.310
- Ligands: DD9.24, NBU.58
1 PLIP interactions:1 interactions with chain E- Hydrophobic interactions: E:V.307
- 13 x DD9: nonane(Non-covalent)(Covalent)(Non-functional Binders)
DD9.5: 4 residues within 4Å:- Chain A: W.243, R.338, I.339
- Ligands: UND.40
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:W.243, A:I.339
DD9.21: 8 residues within 4Å:- Chain B: F.293, S.296, I.336, S.337, G.340, F.341, A.344
- Ligands: UND.22
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:F.341
DD9.24: 7 residues within 4Å:- Chain B: L.224, I.225, I.229
- Chain E: V.302, L.314
- Ligands: HEX.25, UND.59
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:L.224
DD9.29: 7 residues within 4Å:- Chain C: L.224, L.232, N.349, W.353, K.357
- Ligands: HEX.28, DD9.30
No protein-ligand interaction detected (PLIP)DD9.30: 6 residues within 4Å:- Chain C: N.349, M.350, W.353, K.357, I.358
- Ligands: DD9.29
No protein-ligand interaction detected (PLIP)DD9.32: 7 residues within 4Å:- Chain C: S.296, L.299, E.300, A.303, I.333
- Ligands: HEX.27, DD9.35
No protein-ligand interaction detected (PLIP)DD9.34: 5 residues within 4Å:- Chain C: I.285, F.348, I.355, Y.356
- Ligands: DD9.36
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:F.348
DD9.35: 6 residues within 4Å:- Chain C: L.299, F.306
- Chain D: W.243
- Ligands: HEX.27, DD9.32, HP6.46
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:L.299, C:F.306
DD9.36: 7 residues within 4Å:- Chain C: I.285, V.289
- Chain D: G.221, L.224, I.225
- Ligands: DD9.34, HP6.37
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:V.289, D:I.225
DD9.47: 6 residues within 4Å:- Chain D: L.346, N.349, M.350, W.353, K.357
- Ligands: DD9.48
No protein-ligand interaction detected (PLIP)DD9.48: 5 residues within 4Å:- Chain D: L.232, N.349, W.353, K.357
- Ligands: DD9.47
No protein-ligand interaction detected (PLIP)DD9.55: 4 residues within 4Å:- Chain E: A.662, L.663, F.666, C.667
3 PLIP interactions:3 interactions with chain E- Hydrophobic interactions: E:L.663, E:F.666, E:F.666
DD9.56: 7 residues within 4Å:- Chain E: A.318, V.321, E.322, Y.659, L.663, F.664
- Ligands: HEX.57
2 PLIP interactions:2 interactions with chain E- Hydrophobic interactions: E:Y.659, E:L.663
- 5 x NBU: N-BUTANE(Non-covalent)(Non-functional Binders)
NBU.6: 2 residues within 4Å:- Chain A: F.351, I.354
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.351, A:I.354
NBU.10: 6 residues within 4Å:- Chain A: I.336, S.337, G.340, F.341
- Ligands: HP6.9, UND.11
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:F.341
NBU.33: 3 residues within 4Å:- Chain C: I.339, G.340, M.343
No protein-ligand interaction detected (PLIP)NBU.53: 2 residues within 4Å:- Chain E: M.246
- Ligands: UND.54
No protein-ligand interaction detected (PLIP)NBU.58: 4 residues within 4Å:- Chain E: V.307, I.678, Y.679
- Ligands: UND.59
1 PLIP interactions:1 interactions with chain E- Hydrophobic interactions: E:Y.679
- 8 x HP6: HEPTANE(Non-covalent)(Non-functional Binders)
HP6.8: 5 residues within 4Å:- Chain A: F.348, I.355, Y.356
- Ligands: HEX.7, HP6.49
No protein-ligand interaction detected (PLIP)HP6.9: 4 residues within 4Å:- Chain A: I.336, I.339, M.343
- Ligands: NBU.10
No protein-ligand interaction detected (PLIP)HP6.17: 6 residues within 4Å:- Chain B: L.224, L.232, W.353, K.357
- Ligands: HP6.18, HEX.25
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:L.224, B:L.232
HP6.18: 4 residues within 4Å:- Chain B: M.350, W.353, I.358
- Ligands: HP6.17
No protein-ligand interaction detected (PLIP)HP6.37: 3 residues within 4Å:- Chain D: I.225, I.229
- Ligands: DD9.36
No protein-ligand interaction detected (PLIP)HP6.46: 5 residues within 4Å:- Chain D: W.239, W.243, I.339
- Ligands: HEX.27, DD9.35
No protein-ligand interaction detected (PLIP)HP6.49: 6 residues within 4Å:- Chain A: V.280, I.285, V.289
- Chain E: M.247
- Ligands: HP6.8, HEX.50
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:I.285, A:V.289
HP6.51: 3 residues within 4Å:- Chain E: R.661, P.665
- Ligands: UND.12
No protein-ligand interaction detected (PLIP)- 1 x D10: DECANE(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, X. et al., Asymmetric gating of a human hetero-pentameric glycine receptor. Nat Commun (2023)
- Release Date
- 2023-10-11
- Peptides
- Glycine receptor subunit alpha-1: ABCD
Glycine receptor subunit beta,Green fluorescent protein,Glycine receptor beta: E - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
AC
BD
CE
E - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-4-1-mer
- Ligands
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
- 15 x HEX: HEXANE(Non-functional Binders)(Non-covalent)
- 12 x UND: UNDECANE(Non-covalent)(Covalent)
- 13 x DD9: nonane(Non-covalent)(Covalent)(Non-functional Binders)
- 5 x NBU: N-BUTANE(Non-covalent)(Non-functional Binders)
- 8 x HP6: HEPTANE(Non-covalent)(Non-functional Binders)
- 1 x D10: DECANE(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, X. et al., Asymmetric gating of a human hetero-pentameric glycine receptor. Nat Commun (2023)
- Release Date
- 2023-10-11
- Peptides
- Glycine receptor subunit alpha-1: ABCD
Glycine receptor subunit beta,Green fluorescent protein,Glycine receptor beta: E - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
AC
BD
CE
E - Membrane
-
We predict this structure to be a membrane protein.