SMTL ID : 8dtk.1

Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: P.1, N.2, I.3, T.4 No protein-ligand interaction detected (PLIP) NAG.2: 6 residues within 4Å: Chain A: F.9, G.10, F.13, N.14, L.39, F.45 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.13, A:L.39 Hydrogen bonds: A:N.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malewana, R.D. et al., Broadly neutralizing antibody induction by non-stabilized SARS-CoV-2 Spike mRNA vaccination in nonhuman primates. Biorxiv (2023)

Release Date

2023-08-02

Peptides

Spike protein S1: A
DH1047 Fab Light Chain: B
DH1047 Fab Heavy Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Spike protein S1

DH1047 Fab Light Chain

DH1047 Fab Heavy Chain

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